Populus trichocarpa (black cottonwood): 18100653
Help
Entry
18100653 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18100653 isoform X1
KO
K13210
far upstream element-binding protein
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18100653
03041 Spliceosome [BR:
pop03041
]
18100653
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
18100653
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
18100653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
Motif
Other DBs
NCBI-GeneID:
18100653
NCBI-ProteinID:
XP_024459307
LinkDB
All DBs
Position
6:23483312..23489969
Genome browser
AA seq
700 aa
AA seq
DB search
MADESQYSTATDTTPPSSNKRKYDDQSAPPPSTRRQTGFSSPISDPAPPPSYNSVAPPAD
EIQMAKQKAQEIAARIMSGAGADIKRPRAENGASGFDSSENNKGFSSAPLDMKSTMSNSA
PSSIPVSYGSYLGGSGSSKKIDIPQGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADP
NSPTRMVELMGTPEQIAKAEQLINDVLAEGTYSGECFAVQAEAGGSGTVSQRFSGHGGSE
HFAMTIPNNKVGLVIGKGGETIKNMQARSGARIQVIPLHLPPGDTSAERTVHIEGTSEQV
ETAKQLVNEVTSENRMRNPNMGGGYPQQGYQARPPTNWGPSSAPPMQQAGYGYMQTGAYP
GASAQYNMSQPAYQGYPPQQPSGGYPSNWDQSAVSANQQNQVYDYYSQPPSSQQQTPGAS
AAPADSTGYNYSQAPASGYNQQGQGYSQDGYGGYQQPGYGQPPPYDQQQGYTAAPNYSNV
ANPTQEGHTPSYGAQADSAQGSSQPSATGQQGYSTGQQPSPNPASYPSQGAAQPGYGLPP
SSQAGYGGQPPAQYASYGAPQSQKPPANPPVYGQSQQSPSTPGGYGQPAGQPGYPPSQPP
PSGYVQPPDSGSQRAAPSSYGAAGAQPGYAPTYGAPPAGQPGYGQGAQPYNASYGSGYPQ
PAAYSADGNAANNARGTYELAPASQTAAQQSGVAKASPQS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgaatctcaatactcgacggccactgacaccacaccaccatcatccaacaaa
cgcaaatatgatgaccaatcagcaccgcctccgtcgacacgtaggcaaactggattctca
tctccgatttctgaccccgctccacctccatcttacaacagcgtggcgccgcctgctgac
gagatccagatggctaaacagaaagctcaggagatcgccgcccgtataatgagtggtgct
ggtgctgatattaagcgacccagggctgaaaacggtgcgagtgggtttgattccagtgag
aataacaagggattcagctctgctcctctagatatgaagtctaccatgtcaaactcagcc
ccttcatcaattccagtttcatatggctcatacctgggtggttctggttcgagtaaaaaa
attgatattcctcaaggcagggttggtgttatcattggtaaaggtggagagactatcaaa
taccttcagcttcagtctggagcaaaaattcaggtcactcgagatatggatgcagatccc
aactccccaaccaggatggttgagcttatgggcactcctgaacaaattgccaaggcagag
cagttgattaatgatgtccttgcagagggtacttatagtggtgaatgttttgctgtccag
gccgaggcagggggttctggtacagtttcccaaaggttttcaggtcacggtggttctgaa
cattttgcaatgacgattcccaacaacaaggttggtctggttattggcaaaggtggtgag
acaattaagaatatgcaagctaggtctggagcccgtattcaggttatacctttgcatctg
cccccaggtgatacatctgcagaaagaacagttcacatagagggcaccagtgagcaggtc
gagactgcaaaacagttggttaatgaagtcaccagtgagaatcgtatgaggaatccaaac
atgggtggaggttatccccagcaaggatatcaagctcggccacctacaaactggggtcca
tcttctgctccaccaatgcagcaagctggctatggctacatgcagactggagcataccct
ggggcatcagcacagtataatatgtctcagccagcttatcaaggctatcctccacaacag
ccatctggtggatacccctctaactgggaccagtcagctgtctcggcaaatcagcaaaat
caagtttatgattactatagtcagccaccttcatctcagcaacaaacccctggtgcttct
gcagctccagcagacagcactggttataattacagtcaggcaccagcttctggttataac
caacaagggcagggttatagtcaagatggctatggtgggtatcaacagcctgggtatggt
cagccaccaccttatgatcaacagcaaggttatactgctgctcctaactatagcaatgta
gctaacccaactcaggaaggacatactccttcatatggagctcaagcagattcagctcaa
ggttcatctcaaccatctgcaacaggacagcaaggttattctactggccagcagcctagc
ccaaacccagcaagttatccatctcagggagctgctcagcctggttatggattgcccccg
tcttcccaagctggctatgggggtcaaccacctgcacagtatgcaagctatggagcacct
caatcacagaaacctccagccaatccacctgtttatgggcagagccaacagtcacccagc
acccctggaggctatggccagcctgctggacagccaggatatccaccctcccagccacca
ccatcaggctatgtgcagccaccagattcaggttcccagcgtgctgcaccatccagttac
ggtgccgcaggtgctcagccagggtatgctcctacttatggtgcgccaccagctggccaa
ccaggttatggacagggggctcaaccatacaatgcttcttatggtagtggttatccacag
cctgctgcatattcggctgatggcaatgcagctaacaatgctcgtgggacatatgaatta
gcaccagcatcacagactgctgctcagcagagtggagtggctaaagcatcgccacaaagt
tga
DBGET
integrated database retrieval system
