Populus trichocarpa (black cottonwood): 18100676
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Entry
18100676 CDS
T01077
Name
(RefSeq) serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform
KO
K11584
serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18100676
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
18100676
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18100676
03036 Chromosome and associated proteins [BR:
pop03036
]
18100676
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
18100676
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
18100676
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
18100676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B56
Sec7-like_HUS
Motif
Other DBs
NCBI-GeneID:
18100676
NCBI-ProteinID:
XP_024459962
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All DBs
Position
6:24712850..24717574
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AA seq
499 aa
AA seq
DB search
MLRQILSKLPKKSSKTDSAESTRLESPLTQQRSNGSTAGLGKSSSGPKRTSSVVFPASVV
AGIEPLVPFKDVPNAEKMNLFVSKVSLCCVTFDFSDPSKNTLEKDVKRQTLLELVDFVAS
GSMRFSEPAILAMCRMCAVNLFRVFPPYYRSNLSSVGENDDNDDPMFDPAWPHLQIVYDL
LLRFINSTCLDAKVAKKYIDHSFILRLLDLFDTEDPRERDCLKTILHRSYGKFMVHRPFI
RKSLSNIFYRFVFETEKHNGIAELLEIFGSIISGFALPLKEEHKIFLWRVLIPLHKPKSV
GVYFQQLSYCVLQFIEKEPRLASVVIKGILKYWPITNSQKEVMFLGELEEILEAISMVEF
QKVMVPLFWRIGCCINSFHFQVAERALFLWNNDQIINLIAHNRLVILPIIFPALEKNAHN
HWNPGVLNLTLNIRKMFSEMDDALYLACLDQLKEDEEKLSLLAEQRKEAWQRLEYAASLK
PMTGNTAVLVTPLATSMTC
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgttgaggcaaatcttaagtaagctcccgaaaaaatcttcaaaaactgactcagctgag
tctactcggcttgaatcgccattaactcagcagagatccaatggctcaactgcaggtttg
gggaaatcatccagtggtccgaaaagaacttcttctgttgtgtttccagctagtgtggtt
gctgggattgagccacttgtgcccttcaaagatgtgcctaatgcagagaagatgaatctc
tttgtgagcaaagtaagcctttgctgtgtaacttttgatttcagcgacccaagtaagaac
acgcttgaaaaggatgtgaagaggcaaactttacttgaactagttgattttgtggcttct
gggtctatgagatttagtgaacctgccattttagctatgtgtagaatgtgtgctgttaat
ttgtttagggtgtttccgccgtattataggtccaatttgagtagtgttggcgagaatgat
gataacgatgacccaatgttcgatcctgcatggccacacttgcaaattgtgtatgatttg
ttgcttagatttatcaattccacttgcttagatgctaaagttgcaaagaagtacatagac
cattcgtttatattgagactgcttgatttgtttgacacggaggatccgagagaaagggat
tgtttaaagactatattgcataggtcttatgggaagttcatggtgcacaggccttttatt
cgaaagtctctgagcaatatattttatcggtttgtgtttgagaccgagaagcataatggg
attgcggagttgttggagatttttgggagtataattagcgggtttgccttgcccttgaaa
gaggagcacaagattttcttgtggagggtcttgattcctctgcataagccgaagtctgtg
ggggtttactttcagcagttgtcgtattgcgtgttacaatttattgagaaggagcccagg
ttggccagtgtggtaataaaggggatactgaaatactggccaataactaatagccagaag
gaggtaatgttcctgggcgagttggaagagattctggaagcaattagcatggtggagttc
caaaaggtcatggttccattgttctggcggattggatgctgcattaatagtttccacttc
caggtggctgaaagagccctcttcttatggaacaatgaccaaatcatcaacttgattgct
cacaacaggcttgtgattctgcccatcatatttccagcgttagagaagaatgctcataac
cactggaacccaggagtgctcaatctaactctaaacatcagaaaaatgttctccgagatg
gatgacgcattgtacttggcctgccttgatcaattgaaggaggatgaagaaaagctgagc
ttattggctgagcagcggaaggaagcatggcagcggctggagtatgcagccagtctcaag
ccaatgaccggaaacacagccgttttggttactcctctggcaacctcaatgacctgttaa
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