Populus trichocarpa (black cottonwood): 18100705
Help
Entry
18100705 CDS
T01077
Name
(RefSeq) chaperone protein ClpB3, mitochondrial
KO
K03695
ATP-dependent Clp protease ATP-binding subunit ClpB
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
pop03110
]
18100705
Chaperones and folding catalysts [BR:
pop03110
]
Heat shock proteins
HSP100
18100705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
AAA_lid_9
AAA
Clp_N
ClpB_D2-small
AAA_5
AAA_22
AAA_16
Sigma54_activat
nSTAND3
AAA_14
IstB_IS21
AAA_7
Mg_chelatase
AAA_28
Zeta_toxin
AAA_24
TniB
AAA_18
ABC_tran
NACHT
NBD_SMAX1
Torsin
AAA_23
DUF1192
Motif
Other DBs
NCBI-GeneID:
18100705
NCBI-ProteinID:
XP_024459950
LinkDB
All DBs
Position
6:25867690..25874892
Genome browser
AA seq
974 aa
AA seq
DB search
MASKRLTKSALTTIKSTSKLSRLSHSPHSSLSRTRTISSSSSLLGTAFSRPLNDNKNVVF
ANFSTITSTRFFHSSSPRFSSATASSSQLDPSQFTEMAWEGVVGAVETAQANKQQVVETE
HLMKSLLEQKDGLARRIFAKIGVDNSSALQITIDFISHQPKVTGGTSGPVMGSNLSSLLD
NARKNKKDMGDDFVSVEHIVLAFHLDKRFGQQFLRNLGVSEKDLRDAVTAVRGNQRVTDQ
NPEGKYQALDKYGSDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGK
TAIAEGLAQRIVRGDVPEPLLNRKLISLDMGALVAGAKYCGEFEERLKAVLKEVTASNGQ
IILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALARR
FQQVFCDQPTVEDTISILRGLRERYELHHGVKISDSALVAAAVLADRYITERFLPDKAID
LVDEAAAKLKMEITSKPTELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLEELK
QKQKELTELWDREKDLMNRIRSLKEEIDRVNQEMEAAEREYDLNRAAELRYGTLMSLQRQ
LEEADKNLSEFRKSGKSLLREEVTDFDIAEIVSKWTGIPVSNLQQSEKEKLVLLEEVLHR
RVVGQDIAVRSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALASFLFNTENA
LVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFN
ILLQLLDDGRITDSQGRTVSFTNAVVIMTSNIGSHLILETLSNTHDTKEVVYDIMKKQVV
DLARQHFRPEFMNRIDEYIVFKPLDSKEINRIVEIQMNRLKERLKQKKIDLHHTKEATDL
LGKLGFDPNFGARPVKRVIQQLVENEIAMGVLKGDFKEEDSIIVDADVASDLPPQNRLHI
RKIESSSLREAMIA
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaaaaaggctaacgaaatcagctttaaccaccattaaatccacctcaaagcta
tcaagactctctcactcgcctcactcttcactctctcgcactcgcacaatctcctcctcc
tcttcactgctcggcacggccttttctcggcctctaaacgacaataaaaatgtcgttttc
gccaacttttcaacgatcacttccactcgcttcttccactcttcctctcctcgtttctcc
tctgccacggccagctcctcccagcttgatccgtctcaattcactgagatggcgtgggag
ggggtagttggtgctgttgaaacagcacaagctaacaagcaacaagtagtggaaactgag
catttgatgaaatccctattggagcaaaaggatggattggcgagaagaatctttgcaaag
attggagttgacaactcttcagctttgcaaatcacaatcgactttatatcgcatcaacca
aaggtgacaggtgggaccagtggccctgtaatgggttcaaatctcagctccttgttggac
aatgcgcgaaagaataagaaggatatgggagatgattttgtttctgtagagcatattgtc
ttggcattccatttagacaagaggtttgggcagcagtttttgaggaaccttggggttagc
gagaaggatttgagggatgctgttacagctgttcgtggaaatcagagagtaactgatcaa
aatcctgaagggaaataccaggcactggataaatatgggagtgacttgactgagcttgct
aggcgtggaaaactcgatcctgtgataggtcgagatgatgaaattcggcggtgtatccag
atattatcacgtagaacaaaaaataatcctgttattattggggagcctggtgtgggaaaa
actgcaattgctgagggactagctcaaagaattgtgcgtggtgacgtgccagaacctctg
ttgaatcggaagttaatctccctggacatgggtgcattggttgctggcgccaagtattgt
ggagaatttgaggagaggttaaaagctgtgctgaaggaagttactgcttcaaatgggcag
atcatattattcattgacgagatccatactgttgttggtgcaggggctacttctggtgca
atggatgctgggaacttgttgaagccaatgcttgggcgaggtgagctacggtgtataggg
gcaactacattgaatgagtataggaaatacattgagaaggatccagcactcgcacgaagg
ttccaacaagtgttttgcgatcaaccaactgttgaagatacaatatccattcttcgcggg
ctgcgtgagcgttatgagctacatcatggtgttaaaatatcagacagtgcccttgttgca
gcagcagttcttgcagatagatacatcacagaacgttttctgcctgacaaagccattgac
cttgttgatgaagcggctgcaaagctgaaaatggagatcacttctaaacctacagagctg
gatgaaattgatagagctgtgttgaagttggagatggagaagttgtctttgaaaaatgac
accgataaagcatcaaaagagaggttgagtaagcttgaacatgatttggaagaacttaag
caaaaacagaaagaactaactgaactttgggatcgtgagaaggatctcatgaatcgaata
cgatccttaaaagaagagattgatagagtcaatcaagagatggaagctgctgagcgcgag
tatgacctgaaccgcgctgctgagctccgatatggaactctaatgtcccttcaacgccag
ttagaggaggctgacaaaaacctttctgaattccgaaagtccggaaagtctttgcttcga
gaagaggtgactgattttgacattgctgaaattgtaagcaaatggactggtatacctgtg
tcaaaccttcagcaatcagagaaggagaagctagttttactggaagaggtgctacacagg
agagtagttggtcaagatattgcagtaaggtcagtggccgatgccatccggcgttcaagg
gcaggactatctgatccaaatcgtccgatagctagctttatgttcatgggccccactggt
gtgggcaaaactgagcttgcgaaggccttagccagtttcctctttaacactgaaaatgct
ctagtaagaatagatatgagtgaatacatggaaaagcatgcggtttcacgcttggtgggg
gccccacctggttatgttggttatgaagaaggtgggcaactcactgaagtggttcgtaga
aggccatattccgtagtgctgtttgatgaaattgagaaagcgcatcatgatgtcttcaac
attctgttacagttgttggatgatggaaggataaccgactctcaaggaagaactgttagt
tttactaatgctgttgtgattatgacttcaaacatcggttcccatttgatacttgaaact
ctcagtaatacacatgataccaaggaagttgtttatgatatcatgaaaaaacaagttgta
gatttggccagacaacatttccgtccagaattcatgaatcgtattgatgaatatattgtt
ttcaagcctttggactccaaagaaatcaatagaattgttgagatacagatgaatcgactg
aaagagaggctcaaacaaaagaaaatcgatctgcatcacaccaaggaagccaccgacctt
ttggggaaactgggctttgacccgaacttcggagcacgaccagttaagcgtgtgatacag
cagttggttgagaatgaaattgcaatgggagtcttgaagggagatttcaaggaagaagat
tcgattatagttgatgctgatgtagcttcagatcttcctccccagaacagattgcacatc
aggaaaatagagagcagttcattaagagaagccatgattgcctga
DBGET
integrated database retrieval system
