Populus trichocarpa (black cottonwood): 18101085
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Entry
18101085 CDS
T01077
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease 2
KO
K10772
AP endonuclease 2 [EC:
3.1.11.2
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
18101085
Enzymes [BR:
pop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
18101085
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
18101085
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Zn_ribbon_GRF
Motif
Other DBs
NCBI-GeneID:
18101085
NCBI-ProteinID:
XP_006380590
UniProt:
U5GAA1
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Position
7:complement(6027795..6031640)
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AA seq
617 aa
AA seq
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MGNPIKIVSYNVNGLRQRVSQFGSLSNLLNTFDADIICFQETKLRRQELTSDLVIADGYE
SFFSCTRTKDKGRTGYSGVATFCRVKSAFSSTEVALPVAAEEGFTGFIDRCKRNEGLEEF
EKDELVKVDSEGRCVVTDHNHFVLFNLYGPRAAHDDTERIEFKMKFFKILQKRWENLLHE
GRRVFVVGDLNIAPTAMDRCDADSDFEKNEFRRWFRSILMMSGGLFVDVFRAKHPDRREA
YTCWSSSTGAELFNFGSRIDHILCAGPCLHQEHDLQGHNFLSCHVKECDILTQYKRWKPG
DSTRWKGGRGIKLEGSDHAPVYMSLEEICDIPRHSTPPLSARYLPMIHGVQQTLVTLLMK
RQAATQIQSSRISSSFSDGDATIKACSESIKRSFNECSVSRPSTSPSCSLTEEFDSAISK
RDENSKDLTDENQGCPDTTMILQSQHTKFVPAEGTKKKPRKSRCSQLSLRSFFQKSPNLS
TGAENSSTNASPSQAEPNTSSYSNGSHAPGDKSSSPRHCQLNPSAGSQYQDKGNDGSLER
EKNNVALLEWQRIQQLMRNSIPVCKGHKEPCVARIVKKPGRTFGHRFFVCSRAEGPVSNP
EANCGYFKWASSKSQRK
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggggaacccaataaagatagtatcttacaacgttaatggcctaagacaacgagtctcg
caatttgggtctctctcaaacctcctaaacactttcgatgcagacatcatttgctttcag
gaaacaaaattaagaagacaagaattaacatctgatttagtaatagctgatgggtatgaa
tcttttttttcttgcacgcgaactaaagataaaggccgtactgggtactctggggttgca
acattttgtcgtgtaaagtctgcattttcgagtactgaagtggcattgccggttgcggca
gaggagggttttactgggttcattgaccggtgtaaaagaaatgaagggcttgaggagttt
gagaaagatgagcttgttaaggttgatagtgagggacggtgtgtcgttactgatcataat
cattttgttctttttaacttatatgggcctagagcagcccatgatgatacagagagaatt
gagtttaagatgaagttttttaagatattacagaaaagatgggagaatcttctgcatgag
ggaaggagggtattcgttgttggtgatctcaatattgcacctactgctatggataggtgt
gatgcagattcagattttgagaagaatgaattcagaagatggttcaggtccattctaatg
atgtcaggtggcctctttgttgatgttttccgagcaaaacatcctgacagaagagaagca
tacacgtgctggtcatcaagtacaggtgctgaactatttaattttgggagtaggattgac
catattctgtgtgctggaccatgcttgcatcaagagcatgacttgcaaggccataacttc
ttatcctgccatgtcaaggaatgtgacatattgacacagtataaacgctggaaacctgga
gactcaactaggtggaagggagggcggggcatcaaattggaaggttcagatcacgctcct
gtttatatgagtttggaagaaatctgtgatatacccagacatagcactccacctttatct
gctagatatctgcccatgattcatggtgtccagcaaactcttgtgaccttgttgatgaaa
aggcaggctgctacacaaattcaatcctccaggatatcaagttcattttcagatggagat
gctaccataaaggcatgcagtgaaagcatcaaaagatcatttaatgaatgcagtgtatct
cgcccatctacaagtccgtcatgttctttgactgaagagtttgatagtgccatttccaaa
agagatgagaattccaaggatttgactgatgagaatcagggctgtcctgacactacaatg
atactgcaaagtcagcatactaagtttgtgcctgctgagggaaccaagaaaaaaccaaga
aaaagtcggtgttcccagctctctctcagatcttttttccagaaaagtccgaaccttagc
actggtgctgagaactcttctactaatgcttcgcctagtcaggcagaaccaaacactagc
agttactcgaatggttctcatgcaccgggtgataaaagcagcagtcccaggcattgccaa
ctgaatccaagtgcaggatctcagtatcaagataagggaaatgatggctcgcttgagaga
gagaaaaataatgttgctttgttggaatggcagaggatacagcagctcatgcggaatagt
attcctgtttgcaagggtcataaggaaccctgtgttgctcggatagtaaagaaaccaggt
cgtacttttgggcacagattttttgtctgctcacgagctgagggacctgtatccaatcct
gaagcaaattgtggctacttcaaatgggcttcttcaaaatcccagcgcaaatga
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