Populus trichocarpa (black cottonwood): 18101206
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Entry
18101206 CDS
T01077
Name
(RefSeq) probable vacuolar amino acid transporter YPQ3 isoform X2
KO
K23678
solute carrier family 66 (lysosomal lysine-arginine transporter), member 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
18101206
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pop02000
]
18101206
Transporters [BR:
pop02000
]
Solute carrier family (SLC)
SLC66: Lysosomal lysine-arginine transporter
18101206
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GFIT
Motif
Pfam:
PQ-loop
Motif
Other DBs
NCBI-GeneID:
18101206
NCBI-ProteinID:
XP_006380745
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Position
7:complement(2447915..2451681)
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AA seq
375 aa
AA seq
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MSLAYCVKEQKPCVRWVEKYFKDCLCSLKDEFSFTFGLISLVCWGVAEIPQIITNFRTKS
SHGVSLAFLLTWVAGDIFNLVGCLLEPATLYTTSTVVLVLQGLYYDHVYRWCRCRKTKDN
QQVDDDQDPLKPKSADRSGISIPKASPRATPRRDFYYMSARSLAGSNTPPFRSYLRAAKS
GPSAVGLDNESSSDDEAAAPVSVSNTVSQPRPIPRSAGYGTFLATSLNLPLQSKALTQAY
IGYTGRRLLHEGGGTDHSAFGQWLGWLMAAIYMGGRIPQIWLNIKRGSVEGLNPLMFVFA
LVANLTYVLSIVARTTEWDSIKPNMPWLLDAAVCVALDFFIILQYIYYRYFLEKRVDHEE
CYYGDYVDASKAAIS
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgtctctagcttactgtgttaaggaacagaaaccttgtgttcgctgggtagagaagtac
ttcaaggattgcctttgcagtctaaaagatgagttctctttcacttttgggctcattagt
ctagtgtgttggggagttgcagaaatccctcaaatcatcaccaactttcgcacaaagtcc
agccatggagtttctcttgcttttctcctcacttgggttgccggagacatctttaatctg
gtgggctgcttactggagccagcaacgctctacacaacaagtactgtagtactagtgttg
cagggtctatactacgatcatgtctacaggtggtgtagatgcaggaaaaccaaagataat
caacaagttgatgatgaccaagacccattgaagcccaagtcagctgatcgttcaggcatt
tccatacccaaggcttctccaagagcaacccctcgtagagatttttattatatgtcagct
agatctttggccggtagtaatactccaccatttagaagttaccttagggcagccaaaagt
ggtccatcagctgtgggacttgacaatgaatcatcctcagatgatgaggctgcagcccca
gtttcggttagtaacactgttagtcagcctagaccaattccacgatcggctggctatgga
acatttcttgctacatccctcaacttgcctctgcaaagcaaggctttgacacaagcctac
attggatacactggacgaagacttttacatgaaggtggcggcacggatcacagtgcgttt
ggacaatggttgggatggctaatggcagctatctacatgggtggccggatcccccaaata
tggttaaatattaaaagagggagtgttgagggcttgaatcctctcatgttcgtctttgcg
ttggtggccaacctcacttatgtgctaagtattgttgctagaaccactgagtgggatagc
atcaaaccgaatatgccatggttgctggatgctgcagtctgcgtggcgctcgactttttt
atcattttgcagtacatttactaccgatacttcctcgagaaaagggtggaccatgaagaa
tgctactacggagactacgtggatgctagtaaagctgctatttcttga
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