Populus trichocarpa (black cottonwood): 18101276
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Entry
18101276 CDS
T01077
Name
(RefSeq) SUN domain-containing protein 1
KO
K19347
SUN domain-containing protein 1/2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
18101276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
18101276
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centrosome formation proteins
LINC complex
18101276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sad1_UNC
DUF6978
Motif
Other DBs
NCBI-GeneID:
18101276
NCBI-ProteinID:
XP_006379420
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All DBs
Position
8:540357..544350
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AA seq
532 aa
AA seq
DB search
MKTTSFHANFSPTEINPLLKRSGFFISIQHPSKISLSSLQFVQFPIRSNQAFFLQPPIKN
PNYFEMSASTVSITANPASARRRPVVVSDKKSPSNNIELVVPSERRINGGGGGDDIVTAA
ARRDLSHHSIRGDAVLEWTAKDIVQVKKTSSTISPRRGRKVAATKARRPLWMTLVRAFTK
NFVFLLVLVGLVQLVRKLAVKSGDIDGASVGTQMGLREFDGRIAEMESMVKTAVKMIQVQ
VEVVDKKIESEVGGLRREMSRKIDDKGVILEGELRRLVERSEGLEKKIGELKAGDWLSKE
DFEKFHEQFKKENGGEFGWSGVGLDDIMAYAREIVQKEIDKHAADGLGRVDYALATSGGM
VVKHSDPYMAVRGANWFMKGGGVHPNADEMLKPSFGEPGKCFALKGSRGFVQFKLRSAIV
PEAVTLEHIAKSVAYDRSTAPKDCQVSGWMQNPDLDSADDKEKMFLLTEFTYDLEKSNAQ
TFNVLDKTASGLVDTLRLDFTSNHGNPSLTCIYRLRVHGYEPDRASMTAMQP
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaacgtcgtttcacgcaaacttttcaccaacagaaataaatcccctcctgaaa
aggagcggttttttcatttcaattcaacatccctccaaaatttctctctcttctctacag
tttgtacaattcccaattcgatccaatcaggctttctttcttcaacctccgattaaaaac
cctaattactttgaaatgtcggcttcaacggtgtcaatcacggctaatccagcgtcggca
aggcggagaccggtggtggtttccgacaagaaatcaccaagcaacaacatcgaattagta
gttccgagtgaacgacgaatcaacggtggtggaggcggagatgacattgtcaccgccgcg
gcgagaagggatctaagtcatcactcgattcgaggagatgcggttctggagtggacggcg
aaagatattgttcaagtgaagaagacgagttcgacaatttcgccgcggagggggaggaag
gtggctgcgacgaaggcgaggagaccactgtggatgacgttggtgagagcttttactaag
aatttcgtgtttttgcttgttttagtaggcttagtgcagttggttaggaaattggctgtg
aaatcaggggatattgatggtgctagtgtggggacacaaatggggttacgtgagtttgat
gggaggatagcggaaatggagtcaatggtgaaaactgcggtgaaaatgattcaggttcaa
gtggaagttgttgacaagaagattgagagtgaagttggtgggttaaggagggaaatgagc
aggaaaattgatgataaaggtgtgatcttggagggagagttgaggaggttagtggagaga
agcgaagggttggagaagaaaattggggagttgaaagcgggtgattggttgtcgaaggag
gattttgagaagttccatgagcagtttaagaaggaaaatggtggggaatttggttggagt
ggtgtgggtttggatgacataatggcgtatgcgagggagatagtgcagaaagagattgat
aagcatgcggctgacgggcttgggagggtggattatgcgctggcaactagtggtggaatg
gttgtgaagcattctgatccgtatatggccgtgagaggggctaactggttcatgaagggt
ggaggggttcatccgaatgctgatgagatgctaaaaccaagttttggggagcctgggaag
tgctttgctttgaaaggaagtagggggtttgtccagtttaagctgcgaagtgctattgtt
cctgaagctgttacgctggaacacattgctaagagtgtggcttatgataggtcaactgct
cctaaggactgtcaggtgtctgggtggatgcagaaccccgatcttgattcagcagatgac
aaagagaagatgtttcttttaacagagtttacttatgacctcgagaagagtaacgctcag
accttcaatgtattggacaaaacagcctctggacttgttgacacactgaggctggacttc
acatctaaccatggaaacccctcactcacctgcatttatcgcttgagggtacatggttat
gaacctgatcgtgcttcaatgacggcaatgcagccttga
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