Populus trichocarpa (black cottonwood): 18101539
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Entry
18101539 CDS
T01077
Name
(RefSeq) protein indeterminate-domain 5, chloroplastic isoform X1
KO
K25870
zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
18101539
Transcription factors [BR:
pop03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
18101539
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GFIT
Motif
Pfam:
C2CH-4th_BIRD-IDD
C2H2-2nd_BIRD-IDD
C2CH-3rd_BIRD-IDD
zf-C2H2
zf-met
zf-C2H2_6
zf-C2H2_jaz
zf-C2H2_STOP2_C
zf-C2H2_4
Glyco_hydro_134
Motif
Other DBs
NCBI-GeneID:
18101539
NCBI-ProteinID:
XP_006379805
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Position
8:complement(9607397..9611840)
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AA seq
540 aa
AA seq
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MAAASSSATFFGRAREENENQMIQQRSSTTTSSTVPTTEPPKKRRNQPGTPNPDAEVIAL
SPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVRRKVYLCPEPTCV
HHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGT
LFSRRDSFITHRAFCDALAQESARHPTSLNTIGTNLYGNNHMSLGLSQVGSQISQLQVHH
PSGNNMLRLGNAGAAKFEHLIPPPNPSSIPMMHSSGFFMGDANQGPFPNKSLQGLMQLPD
LQSNTNNSSASNLFNLGFFPNNSNASRVSSNENANTGSTSLVNSGFLNANLFNNVNGADQ
GTTLFSSNMGGDHVGSGTMSSLFNTSMQNISPYMSATALLQKAAQMGSTTSSNSPTSLLK
GLGSSSTTGAKSVRPHVSTNFGSSFGNPTVGESLETQMESESQFQGLMNSLANGSSSIFG
NEQDNSYTGFNSSNFSKVGEEKLHQSLAGSDKLTLDFLGVGGRVRNVGGGFPQGDQHSMQ
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcttcatcatctgctactttcttcggccgggcaagggaagaaaatgaaaac
cagatgatacagcaacgttcttcaacaaccacttcctctactgttccaaccacagaaccg
ccaaagaagaggaggaatcaacctggaacaccaaatccagatgcagaggtgatagcacta
tctcccaagaccctaatggcaacaaacaggttcatatgtgaggtatgcaacaaggggttc
caaagggagcaaaacctacagctccacagaagaggacacaacctaccttggaagctaaag
cagaagactacaaaagaagtgaggaggaaggtttatctgtgtcccgagcccacatgcgtc
caccatgacccttctagagctcttggtgaccttactggaatcaaaaaacactactcaagg
aaacacggtgagaagaaatggaagtgtgagaagtgctcaaaaagatatgctgttcaatct
gattggaaagcccattctaagacatgcggtactagagaatacagatgtgactgtggtact
cttttctcaaggcgtgatagttttatcacccacagagctttttgtgacgcactagctcag
gaaagtgcaaggcatcctaccagcttaaatactataggaactaatctatatggaaataac
cacatgagcttaggcctatctcaagtgggttcccaaatttcccagttacaagttcatcac
ccatctggtaataacatgttacggctgggcaatgctggggcagctaaattcgagcaccta
attcctccacctaatccttcttcaattccgatgatgcattcatctggtttcttcatggga
gatgcaaatcaaggaccatttccaaacaaatccttacaagggctaatgcaacttcccgat
cttcaaagcaacactaacaactcctcagcttccaatctctttaaccttggcttctttcca
aataatagcaacgctagccgtgtaagtagcaatgaaaatgccaacactggaagcaccagc
ttagtgaattccggcttcttaaatgcgaacctgttcaacaatgttaatggtgctgaccaa
gggacaacactattctccagtaacatgggtggtgatcatgtcggatcgggtactatgtcc
tcccttttcaacacttcaatgcaaaatatcagcccatatatgtctgctactgcattgctt
caaaaagccgctcaaatgggttcaactacgagcagcaacagtccaactagtttactgaaa
ggcttggggagttcttcaacaaccggtgctaaatctgtgaggccacatgtttccaccaac
tttggcagcagtttcggcaatccaactgtaggtgaaagcttagaaacacagatggaaagt
gaaagccaatttcaaggattgatgaattctcttgccaatgggagctcatcaatttttgga
aatgaacaggataatagctacacggggtttaatagctcaaattttagcaaagtaggcgaa
gaaaagttacatcaaagtcttgcagggtcagataagctgacgttggattttcttggtgtc
ggaggcagggtaagaaacgttggtggagggtttcctcaaggggatcaacatagcatgcaa
taa
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