Populus trichocarpa (black cottonwood): 18101545
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Entry
18101545 CDS
T01077
Name
(RefSeq) RNA-binding motif protein 25 isoform X3
KO
K12822
RNA-binding protein 25
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18101545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
18101545
Spliceosome [BR:
pop03041
]
Complex A
U1 snRNP components
U1 related factors
18101545
Complex B
18101545
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PWI
RRM_1
Motif
Other DBs
NCBI-GeneID:
18101545
NCBI-ProteinID:
XP_006379815
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All DBs
Position
8:10018758..10024124
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AA seq
822 aa
AA seq
DB search
MLNGENHDFILYFIRRPALMCLRRCLFLFFAGILCYPSPYPAMVRPLFLPRPPGAFSVVP
AVPRPLVPGIPGVRPVISQIIRPVVPSVTPAEKPQTTVYVGKIAPSVENDFLSSLLQLCG
PVKSWRRPQDPANGTPRGFGFCEFESAEGVLRALRLLTKFNIDRQELMLNVDQATKEYLE
RYVEKKTENSKIFKETQAAGADKEDRTGIDSEKGEPPISSINVLSNDSDKGNKENHDLAN
FGIVTDEDKVGDREALEKLTSMIEERLKTKPLPPPPPPSQAPADGSVNPNSELPSKSRDV
NTDADIMRSHAADGKNDDETTSGNKAANDQDRPETSSPDRSRGYDRRSRDRDRERDLKRE
KEREIERYGRETGRERVRKEREQRRKIEEAERVYEERLKDWEYREREKEKQRQYEKERDK
ERERKRRKEILHDEEDEDDDSRKRWHRSFLEDRRRKRLREKEDDMAERLKEEEEIAETKR
RDEEEKLQEKQRDPSKLLSGNVSNGSDMRGLTEGPGIESTEKAVEKDYEGVSGNENHTGD
GILQNGAGDESNMALIAESDTRQSGSVPARKLGFGLVGSGKRAAVPSVFHEEEDGDAQKE
KKMRPLVPIDYSNEELQAVQHAVSGAQPPNLVAAAEFAKRISNVAPKEEKPDAERGRRSH
DRSSQRDKDRNDDDINRSRYDNKEKVLEWDRDRNREHGLDKVKTPDKRKLLDVKQLIDMI
PKTKEELFSYEINWAMYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKAS
QMLEMLQAILDDEAEIFVLKMWRMLIFEIKKVETGLSLRSKS
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgcttaatggtgagaaccatgatttcattctgtatttcattcgtagacctgctctgatg
tgtctacgtagatgtttatttttattttttgcaggaatcctttgctatccctccccgtat
ccagcaatggttcgccccttatttcttccacgccctcctggagcattcagtgtggttcca
gcagtgcctcggccccttgttcctgggattcctggtgttcgcccagttatctcccaaatt
atcaggccagtagttccatctgtgacaccagctgagaaaccacaaaccacagtttatgtt
ggcaagatagcaccatctgtggaaaatgattttttgtcatcactccttcagttgtgtgga
cctgtcaagagttggagacgccctcaagatcctgctaatggaactcctagaggttttgga
ttttgtgaatttgaatctgccgaaggggttctccgagcattacgactgctgactaaattt
aacattgataggcaagaactaatgttaaatgttgatcaagcaactaaagaatatctggag
cggtatgttgaaaagaaaactgaaaactcgaagattttcaaagagactcaagctgcaggg
gctgacaaggaggatagaacaggcattgatagtgagaagggcgaacctcccatatcctcc
atcaatgtcttaagcaatgatagtgacaaagggaacaaagaaaatcatgaccttgctaac
tttggtattgtgactgatgaggacaaggtaggtgatcgagaggctctggagaagctcact
agcatgatagaagagaggttaaagaccaaacctctgcctcctcctccaccaccttcacaa
gcacctgcagatggttctgtcaatccaaactcggaattgccatctaaatcgagagatgtt
aatactgatgctgacataatgaggagtcatgcagctgatggtaaaaatgatgatgagaca
actagtggcaataaagctgcaaatgaccaggacaggcctgaaacgagctcgcccgatagg
agtagagggtatgacaggagaagcagagatagagacagagaacgagatctaaaacgggaa
aaagaacgagaaattgaaagatatggaagggaaacaggacgagagcgagttaggaaagag
agggagcagagaaggaagattgaggaggccgagcgtgtgtatgaagaacgcctcaaagat
tgggagtatagggagagagagaaggagaaacagaggcagtatgagaaggagagggataaa
gaaagagaacgcaaacgaaggaaggagattcttcatgacgaggaagatgaagatgatgat
tcaagaaaaaggtggcacagaagttttttagaggataggcgaaggaagaggctacgggag
aaggaggatgacatggctgagaggctcaaagaagaggaagaaattgctgagaccaagagg
agagacgaggaagaaaagcttcaggagaaacagagagatccatcgaaactcttgtctgga
aatgtctcgaatggaagtgatatgaggggtctgaccgaaggacctggtattgaaagtaca
gagaaggctgttgaaaaagattatgaaggtgtttctggtaatgaaaaccacacaggtgat
gggattttacaaaatggtgccggtgatgaatcaaacatggcattgatagctgaatcagat
acgcgacagagtggtagcgttcctgcaagaaagttgggctttggtttagttggctctgga
aaacgagctgctgtcccatctgttttccatgaagaggaggatggcgatgcacaaaaggag
aaaaaaatgaggccactggttcccattgattattcaaatgaggagttgcaggctgtccaa
catgctgtttctggagcacagccaccaaatcttgttgctgctgcagaatttgcaaagcga
atatcaaatgttgcgccaaaagaggagaagcctgatgcagaaagaggcagacgctctcat
gataggtcaagccaacgggacaaggaccgtaatgatgatgacattaatcgaagcagatat
gataacaaagaaaaggttcttgaatgggacagggaccgaaaccgagaacatgggctagat
aaagtcaagacaccagataaacggaagcttttggatgtgaagcaattgattgatatgatc
ccaaagaccaaggaggagctattctcgtatgagataaattgggccatgtatgacaagcat
gagcttcatgagagaatgagaccttggatatcaaagaagattacagagtttttgggagag
gaagaaaccacattggttgattacatcgtgtcgagtactcaagaccatgtgaaggcatcc
caaatgttggagatgcttcaggctatattagatgatgaagctgaaatttttgtcctcaag
atgtggaggatgctcatctttgaaatcaagaaagtggaaacaggtctttccctccggtca
aaatcatga
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