Populus trichocarpa (black cottonwood): 18101568
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Entry
18101568 CDS
T01077
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18101568
03036 Chromosome and associated proteins [BR:
pop03036
]
18101568
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
18101568
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
18101568
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
18101568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_22
Mov-10_helical
PhoH
ATPase_2
Helicase_RecD
DEAD
AAA
AAA_16
SLFN-g3_helicase
AAA_7
SNF2-rel_dom
MOV-10_Ig-like
Cep192_D4
NPHP3_N
Mg_chelatase
AAA_24
Motif
Other DBs
NCBI-GeneID:
18101568
NCBI-ProteinID:
XP_006379846
LinkDB
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Position
8:complement(10616916..10621712)
Genome browser
AA seq
894 aa
AA seq
DB search
MGTIDDKWGDECSVIGDKGEIEYIDYQNDKSVCSYDPSEEGPIVISAPFPFEEGKPRSVF
VGETAIDSITIKNTTAEAVDLWTKIYASTPEDSFKLSLMKPPSANDVKCQEGFMDFSVME
DRMLQPGESLTIWLSCKPKELGLYTTVVHFDVGNDRIERVAFLLADDNISQSLASKKPFS
RGQRKKKFSTDTFISAGSRPARAPGRAYKNRLPRYDIPKDIRALIERKQIPDVIMGGLTI
DNYASYFKTLLIMEEIQLEEDMRSHDMECVTMRRKGNYLSLVVPGLAERRPSLVQGDDIF
VKLADADDTTTPYQGYIYRVEADEVYLKFYQEFHSCHNDGHLYNVHFKYNRVSMRRLYQA
IDAAKDLETEMLFPSETSGSRLIETSTLVPISCSLNEEQICSVEMILGCKGGPPYVIYGP
PGTGKTMTIIEAILQLYQNRKHARILVCAPSNSAADHLLEKLLSEEAVHIQEKEIFRLNA
TSRPFDDIKPDLIRFCLFDEHIFTCPPLGALTRYRIIISTYMSASLLNAEGVKRGQFSHI
FLDEAGQASEPESMISVSNFCNRDTVVVLAGDPMQLGPVIFSRDAESYGLGKSYLERLFE
CESYDSGDENYVTKLIRNYRCHPEILHLPSTLFYEGELIACKESNDDSTSLMTLTNLLPG
KNFPVLFFGIQGCDEREANNPSWFNRIEASKVVEIVKKLATRGNLSDSDIGVITPYRQQV
LKLKKALDNIDMPDIKVGSVEQFQGQERKVIIVSTVRSTIKHNDFDRVHCLGFLSNPRRF
NVAITRAISLLIITGNPHIISKDQYWNKLLWHCVDNDSYQGCALPEKRLECVDNYPTYED
RVDYDGGPVTNEADWCDGWQPSSSGEVGWDHPGSSQAQIPEPVTDEAEWSDGWQ
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgggcacaattgatgataagtggggtgacgagtgctctgtcattggagacaagggagaa
attgagtatattgattatcaaaatgacaaatctgtgtgtagttatgatcccagtgaagag
ggtcctattgtcatttctgccccatttccttttgaagaggggaagccccgatcagtgttt
gttggggaaactgctattgattcaattactattaagaacaccaccgctgaagctgttgat
ttatggaccaaaatttatgcctcaactcctgaggattcttttaagctttcattgatgaaa
cctccatcagctaatgatgttaagtgccaagaaggcttcatggatttttcagtaatggag
gatcgaatgcttcagcctggcgagtcgttaaccatttggttatcctgcaaaccaaaggaa
cttggcttgtacactactgtggtgcattttgatgttggcaatgataggatagaacgagtg
gcctttttgttggctgatgataatatatctcagtctttggcttccaaaaagcctttctca
agaggccaaaggaagaaaaaattctccacagatacctttatttctgcgggatcacgtcca
gcaagggcaccaggtcgagcgtacaaaaacaggcttcctcgttatgatattcctaaagat
attagagcattgattgagagaaagcagatccctgatgttatcatgggaggtctaacgata
gacaattatgcttcctacttcaaaacactgttgatcatggaagaaatacaacttgaggaa
gacatgaggagtcatgacatggagtgtgttacgatgaggaggaaggggaattatctctcc
cttgtggtcccagggcttgcggaacggaggccctcccttgttcagggggatgatattttt
gtaaagcttgcagatgcagatgacacaacaactccatatcagggctatatttaccgggtc
gaggctgatgaagtgtacttgaaattttaccaagaatttcactcgtgccataatgatgga
catctttacaatgtgcacttcaaatataatcgagtcagtatgagaagactgtatcaggcc
attgatgctgcaaaggatttagagacagagatgctatttccatcggagacctctggaagt
aggctcattgaaacttctactctggtgcctatatcttgtagtcttaacgaggagcagatc
tgttcagtggagatgatccttggctgcaaaggaggcccaccttacgtgatttatgggcct
ccaggtacaggcaaaaccatgacaattatagaagcaattctccagctttatcaaaacaga
aagcatgctcggattcttgtctgtgcaccttcaaatagcgcagcagatcacctgttagag
aagcttctcagtgaggaggctgttcacattcaagagaaagaaatattcaggctcaatgca
acatcccgtccattcgacgacatcaagcccgatcttattcgtttttgtttatttgatgag
catatcttcacgtgtcctccactcggtgctcttactcgttatagaatcatcatatcaact
tatatgagtgcctctcttctcaatgctgagggcgtcaagcgaggacagttctctcatatt
ttcttggatgaggctggccaagcttcagaacctgaaagcatgatttctgtatcgaacttc
tgcaacagggatacagttgttgttcttgctggagaccccatgcaattgggcccagtaata
ttctccagagacgcggagagttatggactggggaaatcgtacttggagaggctctttgag
tgtgaatcttatgacagtggagatgaaaattatgtgacaaaactcataagaaactacaga
tgtcacccagagattctgcatcttccttcaactttgttctatgagggagaattgatagcc
tgcaaagagtccaatgatgattcaacttccttgatgactttgacaaaccttcttccagga
aagaactttcctgttctcttctttggcatccagggctgtgatgagagggaggcaaataac
ccatcgtggtttaatcgaatcgaagcaagcaaggtagtggagattgtaaagaaactggct
actaggggtaacctgagcgacagtgacattggggtcattacaccttataggcagcaagta
ctcaaactaaagaaggcactggataacatagacatgcctgacattaaagttgggagtgta
gaacaatttcaaggacaagaaaggaaggttatcattgtatctactgtccgatcaacaatc
aaacacaatgattttgacagggtccactgtttgggattcttaagcaacccgagaaggttt
aatgtagccattactcgtgctatatctctgcttattattaccgggaacccacacataatt
agtaaggaccaatactggaataaacttctatggcactgtgtagataatgactcctatcag
ggttgtgctctcccagaaaaaagactggagtgtgttgacaactatccaacatatgaggat
cgtgtcgactatgatggagggcctgtgacaaatgaagctgattggtgtgatggttggcaa
ccttcatcctctggagaagtaggatgggatcatccagggtcatctcaagcacaaattcca
gaacccgtgacagatgaagctgaatggtctgatggttggcagtaa
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