Populus trichocarpa (black cottonwood): 18101636
Help
Entry
18101636 CDS
T01077
Name
(RefSeq) serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform
KO
K11584
serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
pop04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18101636
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
18101636
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
18101636
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18101636
03036 Chromosome and associated proteins [BR:
pop03036
]
18101636
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
18101636
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
18101636
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
18101636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B56
AAA_33
CCD97-like_C
Motif
Other DBs
NCBI-GeneID:
18101636
NCBI-ProteinID:
XP_024463216
LinkDB
All DBs
Position
8:12427744..12437969
Genome browser
AA seq
526 aa
AA seq
DB search
MIKQILGRLPKKPSKSSENREFGGPSVAPSSTSSASKSTSDFQSNRPGTLNNSSPPGPDS
APHLGYSHGMKPTQVVNPKLNGSSVPAPYEALPGFRDVPNSEKQNLFIRKLNLCCVVFDF
TDPTKNLKEKDIKRQTLLELVDYVTSANGKFTETVMQEVIKMVSVNLFRPLTPHPRENKL
SEAFDLEEEEPMMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYVDHAFVLKLLDLFDSE
DPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIING
FALPLKEEHKLFLVRALIPLHKPRCLPMYHQQLSYSITQFVEKDCKLTDTVIRGLLKYWP
ITNSSKEVMFLSELEEVLEATQPAEFQRCMVPLFRQVAHCLSSSHFQVAERALYLWNNDH
IENLIRQNSKAILPIIFPALEKNGRNHWNQVVQSLTVNVRKIFADTDPELFEECLRQFQE
KEAKAEEFKTKQEATWKRLEEIAATKAASSEAVLVPHAIPTLTSSS
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaacaaatacttggtaggcttccgaagaagccttcgaagtcatctgagaatcgc
gaatttgggggtccatctgttgccccttcaagtacttcatctgcttctaaaagcactagt
gatttccagagcaacaggcctggaactttaaacaattcgtctcctcctggtcctgattct
gctccgcatttaggttatagtcatggaatgaagcctacccaggttgtgaatccgaagctg
aatggcagttcagtgcctgctccgtatgaagcattgcctggatttagggatgtcccgaac
tctgagaagcaaaacttgtttattagaaagctcaacttgtgttgtgtggtgttcgacttc
actgaccctactaagaatttgaaagaaaaggacatcaagcgccagactctgcttgagctt
gtggattatgttacttctgcaaatgggaagttcacggaaactgtcatgcaagaagttata
aagatggtatcagttaatttgtttaggccgcttactccacacccccgggagaataagtta
tcagaggcctttgatttagaagaagaggagcccatgatggacccggcatggccacaccta
cagatcgtgtatgaattctttcttagatttgtagcatcacccgagacagatgcaaagttg
gctaagaggtatgttgatcacgcatttgttctcaagttgttagatctctttgattctgag
gatccaagggagagagagtatctgaagacaattctacatcgtatctatggaaaatttatg
gtgcatcgcccattcatcaggaaggctatcaataatatcttcttccgttttatttttgag
acagagaagcataatgggattgctgagcttttagaggttttgggtagcataatcaatggg
tttgctttgccgctaaaagaagaacacaaattgttccttgttcgggcattgatccctctt
cacaagccaaggtgtttaccaatgtaccaccagcaattatcatactccattacacagttc
gtggagaaagactgcaagcttactgatactgttataaggggtttgttaaaatactggcca
attactaatagttccaaggaggtcatgttcctaagtgagctggaggaagtcttagaagca
actcagcctgcagaatttcaaagatgtatggtacccctgtttcgtcaagtagctcattgc
ttgagcagttcacacttccaggtggccgaaagggctttgtacttgtggaacaatgatcat
atcgagaacttaattagacagaacagcaaagctatactccccattatcttccctgccctg
gagaaaaatggacgtaaccactggaatcaggtggtgcagagcttaacagttaatgttcgc
aagatttttgctgatactgaccccgagctgttcgaggagtgcttgcgccagtttcaagaa
aaagaagcgaaggcagaggagttcaaaacaaaacaagaagccacctggaagcgcttagaa
gagattgccgcaactaaagctgcgagcagtgaagcagtccttgttccccatgctataccc
accttaacatcgtccagctag
DBGET
integrated database retrieval system
