Populus trichocarpa (black cottonwood): 18102222
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Entry
18102222 CDS
T01077
Name
(RefSeq) ubiquitin domain-containing protein DSK2a
KO
K04523
ubiquilin
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
18102222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
18102222
03051 Proteasome [BR:
pop03051
]
18102222
Membrane trafficking [BR:
pop04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
18102222
Proteasome [BR:
pop03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
18102222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBQLN1
ubiquitin
UBA
STI1-HOP_DP
Rad60-SLD
UBA_7
UBA_NBR1_C
Ubiquitin_2
TBK1_ULD
UBA_HOIP
UN_NPL4
Motif
Other DBs
NCBI-GeneID:
18102222
NCBI-ProteinID:
XP_006379369
UniProt:
U5G4H9
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All DBs
Position
9:12696438..12700081
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AA seq
563 aa
AA seq
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MGAAGDSSESKVINEQQGQGEEGAVVINIRCSNGTKFTVRTSLESTVGVFKSLLAQNCDV
PPDQQRLIYKGRILKDDLALHSYGLQADHTIHMVRGFSPAPSAPAHAPAPVAAANPENPD
TTTGVTRGVGSNEGRAFGLGGAGIGASLFPGLGSLGGSSPSALFGDGLPELEQVQQRLTQ
NPDMMREIMNTPAMQSLMNNPELIRSMMMSNPQMREIMDRNPELAHVLNDPSILRQTLES
ARNPELMREMMRHTDRAMSNIESTPEGFNMLRRMYENVQEPFLNATTMGGNAGNDLGSNP
FATLLGNQGGTQVRDASNNPSATGSETTTGLAAPNTNPLPNPWNNAAGGTQTNSTARPNP
AGRASGLGGLGLGGLGLPGMDNLFNSMPDSNQMTQLLQNPAVSQMMQSLLSNPEYMNQML
NFNPQLRGMVDSNPQLREMMQNPELLRQLTSPETMQQMLALQQSLLPQLRQQATQESAQP
GAPTGTPNNAGLDMLMNMFGGLGAGSLLVPNQPDVPPEELYATQLSQLQEMGFFDTQENI
RALRATAGNVHAAVERLLGNLGQ
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgggagctgctggcgattcgagcgagtcaaaagtgattaatgaacagcaagggcaggga
gaggagggtgctgtggtgattaatattcggtgctctaatggtacaaaatttactgtgagg
acgagcttggaatcaacggttggggttttcaaatctctcttggctcaaaattgtgatgtc
ccacctgatcagcagaggttgatttataaaggtcggattttgaaggatgacctggccctt
catagctatggtctgcaagctgatcacaccattcatatggttcgtggtttttcccctgct
ccatcagctcctgctcatgctcctgctcctgtcgctgctgctaaccctgaaaatcctgat
actacaacaggggttacacggggtgttggttccaatgaaggtagggcctttggacttggg
ggtgctggtattggggcatctttgttccctggacttggctcgctaggtggcagcagccca
tctgctctatttggagatgggcttcctgaattggaacaagtacaacaacggctgactcag
aatcccgacatgatgagggaaataatgaatacacctgctatgcagagcctgatgaataac
cctgagttaatacggtccatgatgatgagcaatcctcagatgcgtgagattatggaccga
aaccctgagcttgcacatgttcttaatgatccaagcattcttagacagacattagaatct
gctagaaaccctgagctcatgcgtgagatgatgcgacacactgacagggctatgagtaat
attgaatcaactcctgaaggatttaacatgctccggagaatgtatgaaaatgttcaagaa
ccatttttaaatgccacaacaatgggtggaaatgctggcaatgatttgggttcaaatcca
tttgcaaccctattggggaaccaaggtgggactcaagtcagggacgcttcaaacaaccct
tcagccactggttctgaaacaaccacagggcttgctgctcctaatacaaaccctctgccc
aacccttggaacaatgctgctggaggaacccagacaaactctactgcgaggccaaatcct
gctgggagggcatcaggtcttggtggtttgggtctgggagggcttggtctcccaggaatg
gacaatttgttcaatagcatgcctgattcgaatcaaatgactcaattgttgcaaaatcca
gctgtatcacagatgatgcaaagcctactctccaatcctgaatatatgaaccagatgctc
aactttaatccccaactacgtggcatggttgattcaaatcctcagttgagagagatgatg
caaaatcctgagcttcttcgccaattaacttctcctgaaacaatgcagcaaatgctagct
ttacaacagtcccttcttccgcagctccgacagcaggctactcaggaatcagcacagcct
ggcgcccctacaggaacacctaataatgctgggctggacatgttgatgaacatgtttggt
ggtcttggagcaggcagcttattagtacctaaccaacccgatgtacccccagaagaactt
tatgcaactcaactatcacaactacaagaaatgggtttctttgatacccaagagaatatc
agggcattgcgggctacagctggaaatgtacacgctgcagtagagcgacttctggggaat
cttggccaatga
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