KEGG   Populus trichocarpa (black cottonwood): 18102464
Entry
18102464          CDS       T01077                                 
Name
(RefSeq) splicing factor U2af large subunit B
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18102464
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    18102464
Spliceosome [BR:pop03041]
 Complex A
  U2 snRNP components
   U2 related factors
    18102464
 Complex B
    18102464
SSDB
Motif
Pfam: RRM_1 RBD_DEAH11
Other DBs
NCBI-GeneID: 18102464
NCBI-ProteinID: XP_024465136
LinkDB
Position
10:9675317..9684246
AA seq 919 aa
MMSRSSRHKDKYGRSSEMSQDHQYEGTAARTRPFSFDEIMSIRKNKKASEILEGELKDIL
GGVINEKASDHRSERGNGHNEESSTGLRQHLSEEHGKASYRKKEDNVSMKEDYIAKGRDR
DVRDSETKSKAKMNEDMRTEVKEKTNEKIHDRRKGDKRPSNISESEAVKKHSREVQKDRH
VDKSRGKSERERKEKYRNGIDDKSRDRNAAKKHDLGKGHHLETSERKERKESSKSHHEEL
RLKRRRSRSREHEDRNRRSISLSPRAHKRGSYHKREHVELSSHSVKERSGRQQSDAENNQ
LTNSSSSRHQRRHGGFASGLGGYSPRKRKTEAAIKTPSPAKRSPEKKSAKWDLAPEETNN
VFPAVILSNFQSPNQTASSNIHEVVSAVPVVSAPMKPLSGVSLSSLSTAMKVATESIQLT
QATHPIRRLYMENIPASASEKAVMDCLNNFLISSGVHHIQGTQPCISCIRQKEKGQALVE
FLTPEDASAALSFDGCSFSGSIIKVRRPKDFIEVATGELEKSAAAIDAIGDIVKDSPHKI
FIGGISKVLSSKMLMEIASAFGPLKAYQFENSKDPDEPFAFLEYADESVTFKACAGLNGM
KLGGQVITAIQAVPNASSSGSDGNSQFGQISQHAKALLEKPTEVLKLKNVFDSESLSSLS
NTEVEEVLEDVRLECARFGSVKSINVVKYAAITISTSKSCEFNDDTVSAEATQSLGCDGT
NPKTRNIRGSIDQKFMEGNGIGDDKPASDVMEDEPCQPGQVDSDMAVQDLACKSSSDSQE
PPQDVSDSNVDKVTDDIEIEEVDVENKSTAGEDLNLKEVGDNKLMAGEELNLEEVSGDVE
KAIVNDSMEMKPNSIEKGDCKEQDCNLGLIFERGCVFVEFRRTEAACMAAHCLHGRLFDD
RAVVVEYFPLDIYLARFPK
NT seq 2760 nt   +upstreamnt  +downstreamnt
atgatgagcagatccagtcggcataaagacaagtatggaagaagtagtgagatgtctcaa
gatcaccagtatgaaggaactgctgcacggactagaccgttcagctttgatgagattatg
tctataaggaaaaacaagaaagcatctgaaattttggaaggagaattaaaagatatatta
ggaggtgttattaatgagaaagcttctgatcatagatctgaaaggggtaatggccacaat
gaagaatcttcaactggtctccgacagcacttgtcagaggaacatggcaaggcgagttac
agaaaaaaagaagataatgtttccatgaaggaggattatatagccaaaggcagagatagg
gatgttcgagattcagaaacaaaatcaaaggccaaaatgaacgaagatatgagaactgaa
gttaaagaaaagactaatgaaaaaattcatgacaggagaaaaggtgataagcggccaagc
aatatttctgaaagcgaagctgtgaagaagcattcaagagaggtgcagaaagatagacat
gtggacaaaagtagaggaaaatctgaaagagaaagaaaggaaaaatacaggaatggtatt
gatgataaaagtagagacaggaatgctgcaaagaaacatgatttaggaaaagggcatcat
ttagaaacttctgagagaaaggaaaggaaggaatcttcaaaatctcatcatgaagaatta
aggctgaaaaggagacgatcaaggagccgagagcacgaggacagaaatagaaggtctatt
tcactctcaccaagggctcacaaacgtggttcttatcacaaaagagaacatgtggaattg
tcctcgcattctgtcaaagaaaggtctggacgacaacaatctgatgctgaaaataaccaa
cttacaaacagtagttctagtaggcatcagaggagacatggtggctttgcaagtgggctt
ggtggctattcaccaaggaagagaaaaactgaggccgctattaagactccttccccagct
aaacgctcaccagagaagaaaagtgctaaatgggaccttgcaccagaagaaacaaacaat
gtctttcctgctgtgattctctctaattttcaatcaccaaaccaaactgcttcttcaaat
atacatgaagtggtcagtgctgttcctgttgtttcagctccaatgaagcctctttccggg
gtttcactcagttctttgtcaaccgctatgaaagtcgccactgaatccattcaacttaca
caagcgacccatcctataaggaggctttatatggagaacattccagcttcagcctcagag
aaagctgtgatggactgtcttaataactttttgatttcttcaggcgtccatcatatccaa
ggaacccaaccatgtataagctgcattaggcaaaaagaaaagggccaagctcttgtggaa
tttctgactccagaggatgcttcagcagctctctcttttgatggctgttccttctcaggc
tccattatcaaagtcagacggcccaaagactttattgaagtggcaactggtgaactagaa
aaatcagcagctgcaattgatgcaattggtgatattgttaaggattcacctcacaagatt
ttcattggtggaatttcaaaggttctttcttctaaaatgctcatggagattgctagtgcc
tttggacctctgaaggcataccagtttgagaatagtaaagatcctgatgagccatttgcc
ttcctagagtatgcagacgaatcggttactttcaaggcttgtgcgggtctcaatggtatg
aagttaggagggcaagtaataactgccattcaagctgttccaaatgcatcctcctcggga
agtgatggaaattcacaatttggccagatctctcagcatgcaaaggcacttcttgagaag
cctacagaagtcttaaagcttaaaaatgtgtttgattcagaaagcctttcatccctatct
aacacggaagttgaagaagtattggaagatgtgcgtttagagtgtgccaggtttggctct
gttaaatccattaatgttgtcaagtatgctgcaattaccatatccacttcaaaatcatgc
gaattcaatgatgatacggtatctgctgaagctacacaaagcttaggctgtgatggaaca
aatcctaaaacaaggaacatcagaggatctattgaccaaaagtttatggaaggcaacggc
attggtgatgataaaccagcaagtgatgtcatggaggatgagccatgccaaccaggtcag
gttgacagtgatatggctgttcaagacttagcatgcaagagttcatctgattctcaagaa
ccccctcaagatgtgtcagacagcaatgttgacaaggtcactgatgacattgaaattgag
gaagtcgatgtggaaaacaaatcaacagctggagaagatttgaatttgaaggaggtggga
gataacaaattaatggctggagaagagttgaatctggaggaagtcagtggagatgttgaa
aaggctattgtgaatgatagcatggaaatgaaaccaaattctattgagaagggagattgc
aaggaacaggattgtaatcttggactcatttttgagcggggatgtgtttttgtggagttc
agaagaacagaagccgcatgcatggcagcgcattgtttacatggaaggttatttgatgac
cgtgctgtggtggtggaatattttcctcttgatatttaccttgccagattcccgaagtga

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