Populus trichocarpa (black cottonwood): 18102525
Help
Entry
18102525 CDS
T01077
Name
(RefSeq) alpha-amylase 3, chloroplastic isoform X2
KO
K01176
alpha-amylase [EC:
3.2.1.1
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00500
Starch and sucrose metabolism
pop01100
Metabolic pathways
pop01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
18102525
Enzymes [BR:
pop01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.1 alpha-amylase
18102525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_N_CWD1
Alpha-amyl_C2
Alpha-amylase
Motif
Other DBs
NCBI-GeneID:
18102525
NCBI-ProteinID:
XP_006378407
UniProt:
U5G1G6
LinkDB
All DBs
Position
10:complement(11725807..11736696)
Genome browser
AA seq
906 aa
AA seq
DB search
MSAVSVEPFLRYSRFEKPGYARSRRKAAITVTTAALIKSPSSFNCCCSLIPRRKLLSNAS
YFPFLDLHRVKTHTARASSTDTALVESTNDVVFKETFPLSRTEMTEGKIFVRLDQSKAKE
KEDQWQQLTVGCSLPGKWILHWGVSYVDDTGSEWDQPPENMRPPGSIPVKDYAIETPLKK
ASEGDKFHQVKIGIDPKSPVAALNFVLKDEETGVWYQHKGRDFKVPLVDCLLDSGGGNVI
GAKGGFSMWPDALASEGKDSSSRSKDPKQETRKVEGFYEELPIAKFAVIENSVTVSVIKC
LKTAKNLLYLVTDLPGEVVVHWGVCRDDAKKWEIPAAPHPPETTVFKNKALRTVLQAKED
GNGRSGSFTLDEDLVGFLFVLKLNDSTWLNCMGNDFYIALPISSSIPALSGAGQSEVAPV
SENTVGADQEVSHAIYTDGIINEIRSLVSDFSSEKRQKTKTKEAQESILQEIEKLAAEAY
SIFRSSIPTFLDETALESEATEAPKICSGTGTGHEILLQGFNWESHKLGHWYMELKQKIE
EISSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGNIDELKDLVKRFHGKGVKVLGDA
VLNHRCAHYKNGNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQE
FVRKDLKEWLLWLRKEIGYDGWRLDFVRGFWGGYVKDYLDASEPYFAVGEYWDSLSYTYG
ELDHDQDAHRQRIVDWINATSGTAGAFDVTTKGILHTTLERCEYWRLSDQKGKPPGVVGW
WPSRAVTFIENHDTGSTQGHWRFPSGKEMQGYAYILTHPGTPAVFYDHIFSHYQSEIAAL
ISLRNRNKIHCRSTVKITKAERDVYAAIIDEKVAVKIGPGHYEPPSGPYSWSSKIEGRNY
KVWEAS
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcagttagcgtagagcctttccttcgatactctcgctttgaaaagcccggatat
gctcgtagcaggagaaaggctgctataactgtcactactgctgctctcatcaaatctcct
tcgtcttttaattgttgctgttcactaataccaagacgaaaactcctgtcaaatgcctcc
tacttcccttttcttgaccttcatagggtcaaaacccacacggctagagctagctccacc
gatacggctcttgttgagtccactaatgatgtcgtattcaaagagaccttccctctttcg
cgtactgaaatgactgaaggaaagatttttgtaagattagatcagagtaaggccaaggag
aaggaggatcaatggcagcagcttactgtagggtgtagtcttccagggaaatggattctt
cattggggtgtttcttatgtcgatgatactggcagtgaatgggatcaacctcctgagaat
atgagaccccctggttcgattcctgtaaaggactatgccatagagacgccgttaaagaag
gcatcagaaggagataagtttcaccaagtgaagatagggattgatcccaaaagtccggtt
gcagccctgaattttgttttgaaggatgaagaaactggagtttggtatcagcacaaaggg
agagatttcaaggtgcctcttgtggactgcttgctcgattctggcggtggaaacgtcata
ggagcaaaggggggctttagtatgtggccagatgcattggcttctgaaggtaaagatagc
agcagcagatccaaagaccctaaacaagaaactaggaaggtagaaggattctatgaagag
ctgcctattgctaaatttgccgtgattgaaaactcagtgactgtttcagttatcaagtgt
ctcaagacagccaagaatcttctctatttagtaactgatctacctggagaagttgttgtt
cactggggagtttgcagagatgatgctaaaaaatgggaaattccagctgctccacatcca
ccagaaacaactgtgtttaagaacaaggctttgcggactgtgctacaggcaaaagaggat
ggaaatggacgttcagggtcatttactttggacgaagaccttgtaggcttccttttcgtt
ctcaagctaaatgatagcacttggttgaattgtatgggaaatgatttctatatcgctctc
ccaatctcaagtagcattcctgctctatcaggagccggacaatctgaagttgcaccagta
tctgaaaacactgtaggagcagatcaagaagtttctcatgctatatatactgatggtata
attaatgaaatacggagcttagttagtgacttttcctctgagaagagacagaagacaaaa
acaaaagaagcacaagaaagcattctccaagaaattgaaaaattggctgctgaagcatac
agtatcttcagaagctcaattccaacttttctggatgaaactgctctggaatccgaggca
acagaggctcctaaaatatgctcaggaactggcactggtcatgaaatattgctccaaggt
tttaattgggaatcccataaattgggacattggtacatggagctaaaacaaaaaattgaa
gaaatatcatcccttggattcactgtggtttggttgcccccaccaacagaatctgtgtca
cctgaaggttacatgccaaaagatttgtataatcttaactccagatatggaaatattgat
gagctgaaggatcttgtgaagagattccatggaaagggtgttaaagttcttggagatgct
gttttgaaccatcgttgtgcacactacaagaatgggaatggtgtatggaatatttttgga
ggccgcttgaattgggatgaccgggcagttgttgcagatgatccacattttcagggtagg
ggaaacaaaagtagtggagataattttcatgctgccccaaacattgatcattcacaagaa
tttgtaagaaaggatctcaaagaatggttactctggctaagaaaagagatcgggtatgat
ggatggaggcttgattttgtgagaggattttggggtggttatgtgaaggattacttggat
gcaagtgaaccttattttgctgttggtgagtattgggattccctcagttatacatacggt
gaattggatcacgatcaagatgcacatcggcagagaattgttgactggattaatgccacc
agtgggactgctggtgcatttgatgtcaccacaaaagggattcttcatacgacactggaa
aggtgcgagtattggcgattatcagatcagaaaggaaagcctcctggggttgtcggatgg
tggccatctcgtgctgttaccttcatagagaatcatgacactggttctacccagggtcat
tggagatttcccagtggaaaagaaatgcaaggatatgcttacatcttgactcatccagga
acaccagcagtgttctatgatcacatattttctcattatcaatctgaaatcgcagctctc
atctctctaagaaaccggaacaaaatccactgtcggagcactgttaaaattaccaaggcg
gagagggatgtgtacgcggccatcattgatgagaaagtggcggtgaaaattggaccgggt
cattacgaaccgccaagtgggccctacagttggtcttcaaaaatcgaagggaggaattac
aaggtctgggaagcatcttaa
DBGET
integrated database retrieval system
