Populus trichocarpa (black cottonwood): 18102530
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Entry
18102530 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: threonine--tRNA ligase, mitochondrial 1-like
KO
K01868
threonyl-tRNA synthetase [EC:
6.1.1.3
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
18102530
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pop01007
]
18102530
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pop03016
]
18102530
Enzymes [BR:
pop01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.3 threonine---tRNA ligase
18102530
Amino acid related enzymes [BR:
pop01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
18102530
Transfer RNA biogenesis [BR:
pop03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
18102530
Prokaryotic type
18102530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2b
HGTP_anticodon
TGS
tRNA_SAD
tRNA-synt_His
Motif
Other DBs
NCBI-GeneID:
18102530
NCBI-ProteinID:
XP_024465450
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Position
10:complement(12010687..12020181)
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AA seq
715 aa
AA seq
DB search
MSSAALSSPPFLALLISPSCQTSSPSPLLSSFPSSTTMAASNSHQKDEGYLNTVIPKRIQ
LFQSIQSEQLSRIQSLPHDSIKITLPDGTVKEGKRWHSSPMDIAKEIGKSVAANALISQV
NGVLWDMNRPLEDDCELKIFNFESDEGRDTFWHSSAHILGQALEMEYGCKLCIGPCTTRG
EGFXYDAYYGELGLNDNHFKQIDAAALKAVAEKQPFERIEVSREHALEMFSDNNFKVEII
NDLPPDKTITVYRCGPLVDLCRGPHIPNTSFVKALACLKASSAYWRGNRDRESLQRVYGI
SFPDKKRLQEYKHFLEEAKKYDHRLLGTKQELFFCHPLSPGSWFFLPHGTRVYNKLMEFI
KNEYRRRGYEEVKSPNIYNMKLWETSGHAANYKENMFLLEIEKQEFGLKPMNCPGHCLMF
QHRVRSYRELPLRFADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRKSQIKAEVRRVL
EFIDYAYGKFGFTYELKLSTRPEKYLGALETWEEAEKDLAEALNEFGKPWKFNEGDGAFY
GPKIDISVSDALKRKFQCATLQLDFQLPDRFKLEYSAEDEAKSETPVMIHRAILGSVERM
FAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALQVQDQIHEAGYFVDADTTDRKIQKK
VREAQLAQYNYILVVGEEEAKTGQVSVRMRDNADHSVMSIESLLKLFKDAVADFR
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcggctgctctctcctctccgccgtttctcgccctcctcatctctccttcttgc
caaacctcctccccgtctcctctcctctcctccttcccctcctccacgacaatggctgcc
tccaactctcaccaaaaagacgaaggctatctcaatacagtaatccccaaacgcatccaa
ctcttccaatccattcagtctgaacaactctcccgcatccaatccctccctcacgactcc
atcaagattactttgcctgacgggacagtgaaggaaggaaagagatggcactcgtctccc
atggatatcgcgaaggagattgggaagagtgtggctgcgaatgcgttaatttctcaagtc
aatggagtgttgtgggacatgaataggcctttagaggatgactgtgagctcaagattttt
aattttgaaagtgacgaaggacgcgacaccttttggcattcaagtgctcacattctcggc
caggcacttgaaatggagtatggttgcaaactttgcattggaccctgtaccacaagagga
gagggattctaatatgatgcatactatggtgaattgggattgaatgataatcacttcaag
cagatagatgcagctgcgctgaaagctgttgcggagaagcaaccttttgagcgcattgaa
gtatcacgggaacatgcacttgagatgttttcggacaataatttcaaggttgaaatcatc
aatgatctgccccctgacaaaacaataactgtatacagatgtggcccgttggtagatttg
tgtcgtgggcctcatataccaaacacatcctttgtgaaagcacttgcatgtttgaaggct
tcatcggcttattggaggggtaatagagatcgtgaaagtttacaaagagtgtatggaatt
tcttttcctgataaaaaacgtttgcaggagtacaagcatttcttggaagaagcaaagaag
tacgaccacaggttgttgggtactaaacaggaactattcttttgtcatccacttagtcca
ggaagttggttttttcttccgcatggaactcgggtttacaacaaactaatggaatttata
aaaaatgagtacagaagaagaggttatgaagaggttaagtctccaaatatttataacatg
aaactttgggagacatctggtcatgctgccaattacaaggagaatatgtttttgcttgag
attgaaaagcaagagtttggactgaaaccaatgaattgccctgggcactgtttgatgttt
caacatagagttcgttcatatagagaacttcctcttcgatttgctgattttggggtcttg
catcgtaatgaagccagcggtgcactcactggactaacacgtgttcgaagatttcagcag
gatgatgctcacatattctgcaggaaatcccagataaaagctgaagtcagacgtgtctta
gaattcattgattatgcctatggaaaattcggattcacttatgagctgaagctatctact
aggccagagaaatacctaggagccttggaaacatgggaggaagctgagaaagatctcgcg
gaagcattgaacgagtttggaaagccgtggaagtttaatgaaggtgatggtgcattttat
ggaccaaagatagatatcagtgtatctgatgcattgaagaggaaatttcagtgtgctaca
ttgcagcttgacttccagcttccagatcgttttaagttggaatattcagcagaggatgaa
gccaagagtgaaacacctgttatgatacacagagcgatcctaggttctgttgagcgtatg
tttgctatactattagagcattacaaggggaagtggcccttttggcttagtcctcgtcaa
gcaattgtctgccctgtgtctgagaaatctcagtcttatgcattacaggtgcaggatcag
attcatgaagctggctattttgttgatgcggacacaactgacagaaagatccagaaaaag
gtacgagaagctcagttggcacagtacaattatatactggttgtgggtgaagaggaagcc
aaaactggacaggtgagtgtgcggatgagagataacgctgaccattcagtgatgagtatt
gagagcctactcaaactcttcaaggatgcagttgcagatttccgctag
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