Populus trichocarpa (black cottonwood): 18102534
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Entry
18102534 CDS
T01077
Name
(RefSeq) protein indeterminate-domain 5, chloroplastic
KO
K25870
zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
18102534
Transcription factors [BR:
pop03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
18102534
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
C2CH-4th_BIRD-IDD
C2H2-2nd_BIRD-IDD
C2CH-3rd_BIRD-IDD
zf-C2H2
zf-C2H2_jaz
zf-met
zf-C2H2_6
zf-C2H2_STOP2_C
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
18102534
NCBI-ProteinID:
XP_006378422
UniProt:
U5G1I0
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Position
10:complement(12236120..12242210)
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AA seq
612 aa
AA seq
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MAASSSSAPFFGIREEEQNQQMKQQHSSTPTSSSAQAPPPQKKKRNQPGTPNPDAEVIAL
SPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVRRKVYLCPEPTCV
HHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGT
LFSRRDSFITHRAFCDALAQESARNPPTNLNTIGSHLYGSSNMTLGLSQVGTQISSLQDH
NNQSTDILRLGGGGARTGQFDHLLPSSIGSSSFRPPQQMPSPAFFMQEPNQNYHDENQSQ
QDLLQNKPFHHGLMQFADIHNTTGNPPSAGNLFNLSFLSNSSTASSISNSNNANNSNSNL
PTSGLLMPSHFNNQNGVGGGEGSNIFSNNVMGNQMTSGVPSLYSSSVQNDNMVSHMSATA
LLQKAAQMGSSSSNNSASLLRSFGSSSSSGNKSDRQLVGGNFSGMFSENENNLHDLMNSF
APGNSSMFGSGHAQENPYGGYTASRTSLEQEKQHHGPNFGNTSMDEAKLHQSLNASIGGS
DRLTRDFLGVGPQIVRSMSGSSGFSQREKQQQPQRQHHGMDMGGSSLDSERHNTNISAAP
TSQPFGGNGSFQ
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttcttcttcatcggcgcctttttttggaattagggaagaagaacaaaaccag
cagatgaaacaacagcattcctcaactccaacttcatcttcagctcaggctccaccgcca
cagaagaaaaagagaaaccaacctggaacaccaaatccagacgcagaggtgatagcacta
tctcccaagaccctaatggcaacaaacaggttcatatgtgaggtatgcaacaaagggttc
caaagggagcaaaatctacagctccacagaagaggacataacctgccttggaagctaaag
cagaagactacaaaagaagtgaggaggaaggtttatctgtgccccgaacccacatgcgtc
caccatgagccttctagagctcttggtgatcttactggaatcaaaaagcactactcaaga
aaacatggtgagaagaaatggaagtgtgagaagtgctcaaaaaaatatgctgtccagtct
gattggaaagcccattctaagacttgtggcactagagaatacagatgtgactgtggcact
ctcttctcaaggcgtgacagctttatcactcacagggcattctgtgatgcgctggctcaa
gaaagtgcaagaaaccctcctaccaacttgaacacaattggaagccatctgtatggaagt
agcaacatgaccttaggcttatctcaagtaggaactcaaatctcctcattacaagaccac
aacaaccagtctactgacattttacgacttggtggcggtggtgcccggactggacaattc
gatcatcttctcccttcatcaattggttcatcgtcgtttcgacctccacagcaaatgccc
tcacctgctttcttcatgcaagaaccaaaccagaattatcatgatgaaaaccaatctcag
caagacttgttgcaaaataagccgttccatcatggactgatgcaatttgctgatattcac
aacaccacaggcaaccctccctctgctggcaatctgttcaacctcagctttctttccaat
agtagcaccgcaagcagcatttccaacagcaacaatgcaaacaattccaacagcaaccta
ccaacttcaggattgctaatgcccagtcatttcaacaaccaaaatggtgttggtggtggt
gaagggagtaatatcttctcaaataatgtaatgggtaatcaaatgacctccggtgtccct
tctctctacagctcttcggttcagaatgataacatggtctctcatatgtctgctactgcg
ctgcttcaaaaggctgctcaaatgggttcaagttcaagcaacaacagtgcctcattactt
agaagttttggtagctcttcctcaagtggtaacaaatcagataggcaacttgttggtggg
aactttagtggcatgttcagcgaaaacgagaataatcttcatgacctaatgaactcattt
gctcctgggaattcctccatgtttggttccggacatgcacaagaaaacccctatggtgga
tatactgcaagcaggacaagtttggagcaagaaaagcagcaccacggcccaaattttggc
aacactagtatggatgaagcaaagttgcaccaaagtctcaatgcaagcattggtgggtct
gatagattgacaagagactttcttggtgttggtcctcaaatagtgagaagcatgagtgga
tcatcagggttttcacagagagaaaaacagcagcagccacagcgtcagcatcatggcatg
gatatgggtggctcctccttggattcagagagacataacactaatatttctgcggcgccg
acaagccagcctttcggaggaaatgggagttttcagtga
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