KEGG   Populus trichocarpa (black cottonwood): 18102606
Entry
18102606          CDS       T01077                                 
Name
(RefSeq) uncharacterized protein LOC18102606 isoform X1
  KO
K11797  PH-interacting protein
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    18102606
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     18102606
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_SCAP WD40_MABP1-WDR62_2nd WDR55 Beta-prop_DCAF4 Bromodomain Beta-prop_RIG_2nd Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 VPS8_N WDR90_beta-prop_4th WD_LRWD1
Other DBs
NCBI-GeneID: 18102606
NCBI-ProteinID: XP_024466674
LinkDB
Position
10:complement(15544620..15560570)
AA seq 1713 aa
MMPLSFSSKEREIAQLAESETSRRRVKDVDVDLSEVYFLIMHFLSAGPCQRTYVQFWNEL
LEHQLLPRRYHAWYSRSGAHSGDENDNGLSFPLSYNSLEEQYAMYPHIEKNHLVKLLKQL
LLNTASPSEGLIGDAPNAADVPTLLGTGSFSLLSCDRDKGNDQVKHPPAHMRWPHRHADQ
VRGLSLREIGGGFARHHRAPSIRAACYAIAKPSTMVQKMQNVKRVRGHRNAVYCAIFDRS
GRYVVTGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVNSNNTLVASSSNDCIIRVWRL
PDGMPISVLRGHSAAVTAIAFSPRPGSAYQLLSSSDDGTCRIWDARSSNLGTRIYVPRPP
DPVAGKNSGPSTSSGPQSHQIFCCAFNAHGTVFVTGSSDHLARVWNALKSNTVDSAQPNH
EIDVLPGHENDVNYVQFSGCAMPSRFSMADNSKEENIPKFKNSWYFHESIVTCSRDGSAI
IWIPKSRRSHGKAGRWIRHYHLKVPPPPMPTQPPRGGPRQRILPTPRGVNMIAWSLDNRF
VLAAIMDCRICVWNAADGSLVHSLTGHTQSTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE
GTPIRIYEISHFKLVDGKFSPDGTSIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYR
PLIQDTYGNVLDQETQQVPFRRNMQDLLCDSGMIPYTEPYQSMYQQRRLGALGVEWKPSS
VRFAVGPDFSLDPDNQMLALADLDVLVEPLPDFIDAMDWEPENDMQSDENDSEYNAPEEN
SSEAEQGRSNYSSSGDPECSAEDSEAEGRDGFRGSKRRKQKAEIQIMTSSGRRVKRKNLD
ECDGNSIRSNRTRKSRIDRKASKRKSSTSKALRPQRAAARNALSLFSKITGTATDAEDED
GSEGDLSETESGMQDSNIESDESDRSLHDEGNRNLKGKDILEEPEDFAKYHEFTESHMNT
INRRRLVLKLPVHDSSKIVLPECGMHKGDSQVDLVGSSSKAPQEATEVNGVPTSSQDPGY
FSGDAHCSRMDGGRRAQIKNYPLDLSEEYKNGDIRWGGVKARTFKRQRLGESISSAAYTG
SSACLGEHNENENNLNRYSKLQEDNGTISPTLEVQNNTDKGVVPVNGRNAGADTFELVND
VSNGEEHPTFNGCLDSDKLPTLGHMVNGNDNPPDLRESLPPFSTKIRIRSKKILKDSLDN
QGNGRCDLSTDKPANMTQNPVKEMLENNGSNGIAPEYKGDGLEESDTQIGEISMPSLDNS
SGSRSDPKRMFDVVYRRSKPGRGRISSEGDGSIREDTLSACDPHLDFRGDSYEGASGGSH
RTRSMGLKAPTHDSNMASNNLQLEQGHESDDTCRDALNNSINRCQLSCEEWGSSSRMTAR
LRSTRNRKASYHFRDTSPVDGRKLHQSAKKASWLMLSMHEEGSRYIPQQGDEVAYLRQGH
QEYLDRMKSKEAGPWKIMKGNIRAVEFCKVEALEYAALAGSGDCCCKMTLRFVDPTSSTF
QKSFKLTLPEMTGFPDFLVERTRFDAAIQRNWSRRDKCKVWWKNEGEEDGDWWHGRVLYT
KPKSSEFPDSPWERCTVQYKSDPKELHEHSPWELFDDDTQLEQPRIDEEITNKLLSAFAK
LERSGKKDQDHYGVEKLRQVSQKSNFINRFPVPLSLEVIQSRLENNYYRSLEALKHDFEV
VLSNAESHFEKNAELSIKMRRLSNWFARTLSSL
NT seq 5142 nt   +upstreamnt  +downstreamnt
atgatgcctttgagcttttccagtaaggagcgtgagattgctcaacttgcagagtcagag
acaagtcgcagaagggtgaaagatgtggatgttgaccttagtgaagtttactttttaatt
atgcatttcctttcagctgggccatgtcagagaacttatgtacagttttggaatgaactt
ctcgaacatcaacttttacctagaagatatcatgcttggtattcaagaagtggagcacat
agtggggatgaaaatgataatggtctatcatttccattaagttacaatagtttggaggag
cagtatgcaatgtaccctcacattgagaagaatcacttggtaaagcttttgaagcaatta
ttgctcaacacagcctctccatcagaaggcttgattggtgatgctccaaatgctgctgat
gttcctacccttctgggaacgggttcattttcacttttgagttgtgatagagataaggga
aatgaccaagtcaagcacccccctgctcacatgcgatggcctcatagacatgctgatcag
gttcgcgggttaagtttgagggaaattggaggtggttttgcaagacaccatcgtgcacct
tctattcgtgcagcatgctatgctattgcgaaaccatcaactatggtacagaaaatgcaa
aatgtcaagagagtacgcggacatcggaatgctgtctattgtgcaatatttgatcgctct
gggagatatgttgtcactggttcagacgatcgtcttgtaaaaatctggtccatggaaact
gctttttgcttagctagctgtcgggggcatgaaggggacattactgacttggctgtaaat
tcaaacaataccttggtggcatcctcttcaaatgattgcataattcgagtttggcgtttg
ccagatgggatgccaatatcagttctacgtggacactctgcagctgttactgccattgca
tttagtccaaggcctggttctgcataccagcttttgtcgtcttcagatgatggaacatgt
aggatttgggatgccaggtcttccaacttaggtacacggatatatgttccaaggcctcca
gatcctgtggctggaaagaacagtggtccgtccacaagtagtggtcctcagagccatcag
attttttgttgtgcattcaatgctcatggaactgtatttgtcactggtagctctgaccac
cttgctagggtgtggaatgctcttaaatccaacacggttgattcagcccagccaaatcat
gagatagatgtgttacctggccacgagaatgatgtcaactatgtccaatttagtggttgt
gccatgccatctagattttctatggctgacaactcaaaggaagaaaatattccaaaattt
aaaaattcatggtattttcacgaaagcattgttacctgttctcgagacggcagtgcaatt
atttggattccaaaatcacgtagatcacatggtaaagctggccgttggatacggcattat
catctgaaagttcctcctccaccaatgcctactcaacctccacgaggaggtccacgacag
agaattcttccaactcctcgtggggtaaacatgattgcgtggagtctggataatcgtttt
gtccttgctgctatcatggattgcagaatatgtgtttggaatgctgctgatggtagtttg
gtgcattctttgactggtcatactcaatctacatatgttctggatgttcatcctttcaac
ccgcgaatagctatgagtgctggctatgatggaaaaacaatagtgtgggatatttgggag
ggcacacccatccggatctacgaaatttcacatttcaagttggttgatggaaagttttca
ccggacgggacatctattatactttcggatgacgtgggtcagttgtacatattaaataca
ggccaaggcgagtcccaaaaggatgctaaatatgatcagttcttccttggtgattatcgg
cccctgatacaagatacctacggaaatgtacttgaccaggaaactcagcaagtaccattc
cggcggaatatgcaggatcttctttgtgactcagggatgattccttatacggaaccttac
cagagcatgtaccagcagagacggttaggagctctgggtgtggagtggaagccatcttct
gtaagatttgctgttggaccagacttcagtctagacccggataaccaaatgctcgccttg
gccgacttggatgtattggttgagccactgcctgatttcatagatgccatggattgggaa
ccagaaaatgacatgcaaagtgatgaaaatgattcagagtacaatgcccctgaagaaaat
tcttctgaggccgagcaaggaaggtcaaattatagttcctctggtgatccagagtgtagt
gcagaagacagtgaggctgagggcagggatggtttccgaggatctaaaaggagaaaacaa
aaggctgaaattcagataatgacttcttctgggaggcgtgttaaaaggaagaatttggat
gaatgtgatggaaactcaattagaagtaatcgaactaggaaatcaaggattgacaggaaa
gcttcaaagaggaagtcttccacttcaaaggccttgagacctcaaagagctgctgcccgc
aatgcgcttagtttattttcaaaaattactggaacagctacagacgcagaagatgaagat
ggctcagaaggtgacttatcagaaactgaatctggaatgcaagactcaaatattgaaagc
gatgaatcagatagatctttgcacgatgagggaaacaggaatttgaaaggaaaagatatc
ctggaagagcctgaagacttcgcaaaatatcatgaatttactgaatcgcacatgaatact
ataaataggaggagattggtccttaaactgccagttcatgattctagtaagattgtgctc
ccagagtgtggaatgcacaagggtgacagccaggttgatttggttggatcatcatccaaa
gctcctcaggaagccactgaggtaaatggggttcctacaagctctcaagatccaggatat
ttttctggtgatgcacattgcagcagaatggatggaggaagaagagcacagataaaaaat
tatcctttggacctgtctgaagaatataaaaatggggatatcagatggggaggtgtaaag
gctcgtacttttaagcgtcagagattgggagaatccatttcatcagcagcatatactgga
tctagtgcatgccttggtgaacacaatgaaaatgaaaataatctcaacaggtactcaaaa
cttcaggaggataatggcacaatatcccctactttagaagttcaaaataacacggacaaa
ggagttgtaccagtgaatggaagaaatgctggtgctgatacctttgagcttgtaaatgat
gtgtccaatggtgaagagcacccaaccttcaacggatgcctggactctgataaattacca
accctgggtcacatggttaatgggaatgacaaccctcctgatctcagagagagcctcccg
cctttctcaacaaagataaggataagatcaaaaaagatattgaaggactcactagataat
caaggaaatggtaggtgtgatttatctactgataaacctgcaaacatgacacagaatcca
gtcaaggagatgctggagaataatggctccaatggaattgctccagaatataaaggtgat
ggattggaagaatcagatactcagattggtgaaatttccatgccatccttggacaactct
tcggggtcccgttcagatccgaaaaggatgtttgatgttgtttacagaaggtcaaagcca
ggcagaggtagaattagctcagaaggtgatggtagcatcagagaagacactttaagtgct
tgtgaccctcatcttgatttcagaggggattcctatgaaggcgcatctggtggatctcat
agaacacgttccatgggcttgaaggcacctacacatgattcaaatatggcaagcaataat
ctccagttggagcagggacatgaatcagatgatacttgtagagatgccctcaacaattcc
attaatagatgtcagctttcatgtgaagaatggggatccagctcaaggatgacagctcgc
ttgagatctactagaaacaggaaagccagttatcactttcgtgacacaagtccagtagat
ggaaggaagttgcatcagtcagccaaaaaagcatcatggttaatgctgtcaatgcacgag
gaggggtctcgttatatcccccagcaaggggatgaagttgcatatttgagacagggccat
caagagtacttagatcgcatgaagtctaaagaagcaggcccttggaaaataatgaaggga
aacattagggcggtcgagttctgtaaggttgaagcccttgagtatgctgctcttgcagga
tctggagattgttgttgcaaaatgacgcttagatttgtagatcctacttccagcacattt
cagaaatcattcaagttaactctacccgaaatgactggcttcccagattttcttgttgag
agaactcggttcgatgctgccatacagaggaattggagtcgtagggataaatgtaaggtc
tggtggaaaaacgagggtgaagaagatggtgattggtggcatggccgggttctatatacg
aagcccaaatcttcggagtttcctgacagtccatgggagaggtgtactgttcagtacaag
agcgatcccaaagaattgcatgaacacagtccttgggagctttttgatgatgatactcag
ttggagcagcctcgtatagatgaggagatcacaaataagttgttgtctgccttcgccaaa
ttagagcgatcaggcaaaaaagaccaggatcactatggggttgaaaagctaaggcaagtt
tcacagaagtcaaattttattaacaggttcccagttccattgtctcttgaagtgatccag
tcaaggttagaaaacaactactatagaagcttggaggcattgaagcatgactttgaagtc
gtcctctcaaacgcagaatcacactttgagaagaatgcagagctctccataaaaatgaga
cgtttatcaaactggttcgcgcggacattatcatctttgtag

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