Populus trichocarpa (black cottonwood): 18102695
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Entry
18102695 CDS
T01077
Name
(RefSeq) nuclear pore complex protein NUP88
KO
K14318
nuclear pore complex protein Nup88
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18102695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18102695
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
18102695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
SHE3
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
18102695
NCBI-ProteinID:
XP_006378662
UniProt:
U5G263
LinkDB
All DBs
Position
10:18561454..18566742
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AA seq
807 aa
AA seq
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MRFNFELTEPDPDSSSRKSLTPKEDILWVPLQNHPLFTSSASTSLEGDAAPQPPSNLLAW
DGASRLYYWDSNLRCLHRISIGLGDPDPSSVLAASPSKVLQTDVEINFEVNKISINRNGS
ALLLSGAYGLCVMYLYGRSSSKDDSIICRTVSIGSQIYFNERNVIHMRKVSWHPYSDTHL
GILSSDSVFRLFDLSSDVLQPEQEYYLQPVEPGRSRNAASICPVDFSFGGDHLWDRFSVF
VLFSDGSVYILCPIVPFKSVYKWESVLEIYSDAEMFGLKSANPVAVNNSNLAIFWLEATF
PELAHESKEGELSTLKAHPYAVFDASLCLQGPLRKVCHGVEDEDLAVRGAECEGHAVSFL
YDLASKDSILVTAWSGGQLQIDALSDEIQPVWTVGSPPRLRLNSHNHILGLAMLCESISG
ELPVVKLDQPHDYTVWLGHPPPLLRLAIVDLALPRKTESGSHISMFADPLMPERIYSVHD
GGIDSIVLHFLPFTSQSSGKDETVRSPSVHPVLSTCQVENSTPSPLYGFIALSDSFGYSW
IAVITSNKECVVLEMKTLNLLVPVHVDMEKESASSEEWTNRNPPDIISKELLSGPKVVLV
PQGSPNLRSVAADSIEGRSTLHQYLNLFHENYVEYAHKVYFELKHHGPQLKRIIDDQHAR
LGEAQEKLSKVVNKQSGLVNRTNHAMHRHNLLEQRLHCLRNLPGAHKKPLSKAEREFKSE
LDQFTRVELDALRASIDTLRARLGRFTQSLKGDVPNQQRKIVGRNNVLDAQISQLKSSIT
KLSLVNSENTKKVKLVESALKNQESSR
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgagattcaacttcgagttgacagaaccagacccagactcttcttctcgaaaatctctt
actcccaaagaagatatcctatgggtcccactccaaaaccacccgctcttcacttcctcc
gcctccacctcactcgaaggtgacgctgcaccgcaaccaccatccaatctactagcttgg
gatggcgcttctagattatattactgggattcaaacctccgctgcctccatcgaatttca
attggcctcggcgatcccgacccttcttctgtcctcgctgcttctccctctaaggtatta
caaacagatgtggagattaattttgaggttaacaaaatttctatcaatagaaatggctct
gctttgcttctttccggtgcctatggtttatgtgttatgtacctttatggacgctcttct
agtaaagatgactccatcatttgcaggactgtttccattggttcgcaaatttattttaat
gagagaaatgtaatacacatgcgaaaagtttcgtggcatccttacagtgatacgcattta
ggaattctttcttctgattcggttttcagactgtttgatttgtcctcagatgtcctgcag
ccagagcaggaatattatctacagcctgttgaaccaggtagatccaggaatgctgcatca
atctgtccagttgatttttcttttgggggcgaccacttgtgggacaggtttagtgttttc
gtgttattcagcgatggttcagtttacatcctttgcccaattgttccattcaaaagtgtc
tacaaatgggaatctgttttggagatatatagtgatgctgaaatgtttggactgaaatca
gcaaatccagttgctgttaacaactcaaatctggcaatcttttggctggaagctacattt
cctgagttagcccatgaatcaaaggagggggaactatcaacactaaaagctcacccttat
gctgtatttgatgcatcactttgtttgcagggccctttacgcaaagtatgtcatggtgtg
gaagatgaagacttagcagttaggggtgcagaatgcgaaggtcatgcagtcagttttctt
tatgatttagccagcaaagactcaattctggtgactgcctggagtggtgggcaattgcaa
atagatgccctatccgatgaaatccagccagtctggacagttggtagtccacctcgtctt
cgtcttaattcccacaaccatattcttggtcttgcaatgctttgtgaatcaatctcgggt
gagcttcctgttgtgaagcttgatcaaccgcatgattatactgtctggttaggtcatcca
ccacctttgttgagacttgcaattgtggatttggccttaccaaggaaaacagaaagcggg
tctcatatttcaatgtttgctgatccccttatgcctgaaagaatctattctgttcatgat
ggagggatagattcaattgttttgcattttcttccatttaccagtcagtccagtggcaag
gatgagacagtccggtctccctcagtgcatcctgtccttagcacatgccaggtggagaac
tccacgccttctcccctatatggctttatagcgttgtcagattcatttgggtactcatgg
attgcagtgattacctccaacaaagaatgtgttgtgctagaaatgaaaacattaaattta
ttggtgcctgtacatgttgatatggagaaggaatctgcaagttctgaagaatggacaaat
agaaatcctccagacatcataagcaaagaactacttagtggtcctaaggtggttcttgtt
cctcagggttcaccaaatcttcgatctgttgctgctgattctattgaagggcggtcaact
cttcaccagtacttgaaccttttccatgaaaactatgttgagtatgcacataaggtctac
tttgaactcaagcatcatggcccccagttgaagaggatcattgatgatcagcatgctcga
ttaggcgaggctcaggagaagctttcaaaagtggtgaataagcagtcaggattggtgaac
aggactaatcatgcaatgcacagacacaatcttctggaacagcgcttgcattgcctgagg
aacttgcctggagctcataagaagcctttgtctaaagcagaacgtgaattcaagtccgag
cttgaccaatttaccagagttgaattggatgctttgcgtgcttccattgacacactaaga
gcaaggctgggaaggttcacacaatctttgaaaggtgatgtaccaaatcagcaaaggaaa
atagtgggaaggaacaatgtcctagatgcccagatatcgcagctgaaatcctcaattaca
aaactctcccttgtcaatagtgagaatacaaagaaagttaagcttgttgaatccgcgtta
aaaaatcaggaaagcagtagatga
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