Populus trichocarpa (black cottonwood): 18102713
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Entry
18102713 CDS
T01077
Name
(RefSeq) actin-related protein 5 isoform X1
KO
K11672
actin-related protein 5
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18102713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
18102713
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
18102713
INO80 complex (yeast)
18102713
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Actin
DUF6494
Motif
Other DBs
NCBI-GeneID:
18102713
NCBI-ProteinID:
XP_024466932
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All DBs
Position
10:19421267..19426503
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AA seq
720 aa
AA seq
DB search
MPFVSQIKRQTDYNLYSSTTPIVIDNGASNFRIGWAGENDPRVIFRNIVQRPRHKTTGET
VSIVGDHDTTLLKYFDCSRSGPRSAFDSNVVYQFEIMEYILDFGFDRLGANGSEIDHPVL
ITECILNPVQSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQHGICDKDGLAICPGFTT
THVIPFIDGEPVYKGCSRTNIGGYHVTDYLKQLLSLKYPHHMARLTWEKVEDLKMEHCYI
ATDYASEARLFQKGTKEAEEKTRCWQLPWVPPPVEEPPSEEEIARKAAIKERQGQRLREM
AEAKRSTRINELENQLRGLEFLLQQLEQVEESEIPFFLKDTGYVSRQEIETALAKATQSL
RKVKGEPKGEQAEVEEKTDEKYPLVNIPDNMLTQDQLREKRRQMFLKTTSDGRQRAKQKR
VEEDLERERKNQLDEQKRLENPELYLGEMRTKYKELCEKVEQRKRLKTNGNHSNGNGMSG
GVGRGERLNAAQRERMRLLTTAAFDRGKGEDNFGAKDEDWQLYKLMSKDNDDDDEGPDED
ETELARVSSRLQEIDATFVPKPEPGPSQSAADMPRSRPLTKEDFQILLGVERFRCPEILF
HPNLVGIDQAGLDETAGVSMRRLSSKDQVLEERLTNSILMTGGSCLYPGLSERLEAGIRM
IRPCGSPIKVVRALDPVLDAWRGASLYAAAVQFPQQTFSRMDYFEKGEDWLRGYQFQYTL
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgccttttgtttcccagataaaaagacaaacagattacaatctctactcttcaactact
cctatagtaatcgacaatggtgcctccaattttcgtattggatgggcgggggagaacgat
cctcgagttattttccgtaacattgttcaaagaccacgccacaaaaccactggtgaaacg
gttagtattgttggggatcatgatactacattgttgaagtacttcgattgtagtcggtcg
gggcctcgctccgctttcgatagcaatgttgtttatcagttcgagattatggaatatatt
ctcgactttggtttcgatcggctgggagcaaatggatcagagattgatcatcctgtcctg
atcacagaatgcatactcaaccctgttcaatctcgcagtaaaatggcggagctgcttttt
gaaacttacggagttccatctgtagcgttcggtgttgatgctgcattcagctataagtat
aatcaacagcatgggatttgtgataaagatgggcttgctatttgtccaggatttacaaca
actcatgttattccgtttattgatggagagcctgtttataaagggtgctcccgaactaat
attggtggataccatgtcactgattacttgaagcagctcctttcacttaaataccctcat
cacatggctcggttaacatgggagaaggttgaagacctgaagatggagcattgttatatt
gcaacagactatgcttcagaagctcgattatttcagaaagggaccaaggaagctgaagaa
aaaacgaggtgttggcagctcccttgggttccaccaccagttgaggagcctccatcagaa
gaagagattgccagaaaggcagctataaaggaaagacaaggtcaacggttgcgagaaatg
gctgaggcaaaaaggtcaacgaggataaatgagctagagaaccagttgcgtggcttggaa
ttccttttgcagcagctggaacaagtggaagagagtgaaattccatttttcctgaaagat
actggctatgtttccaggcaagaaatagaaactgctcttgccaaagcaacgcagtcatta
cgaaaagtaaagggtgagccaaagggtgaacaggctgaagttgaagaaaagactgatgaa
aagtatcctcttgtcaatattcctgataacatgctgacccaagatcagctaagagaaaag
agaagacagatgttccttaaaaccacatctgatggccgccaacgagctaaacagaaacgt
gttgaagaggacctggaacgagaaaggaaaaatcagctagatgaacaaaaacgcttagag
aacccagagctttatctaggagaaatgcgtactaaatacaaagaactctgtgagaaagtt
gagcagcgaaaacgactcaagacaaatgggaaccactcaaatggaaatggtatgtctggt
ggtgttggtcgcggtgagagattgaatgctgcccaaagagaaaggatgcgcctcttaaca
acagcagcttttgaccgagggaagggtgaggataattttggtgccaaagatgaagattgg
caactttacaaactgatgagcaaagataacgatgatgatgatgaggggccagatgaggat
gagacagagcttgcccgtgtatcttccaggcttcaggagatagacgcaacatttgttccc
aagccagaaccagggccctcacaatcagctgctgacatgccacggtctcgtcctcttacc
aaggaagatttccaaattctgctcggggttgaaaggttccgatgccctgaaattctgttt
catcccaacttagttggaatcgaccaggcaggcctagatgagacggctggggtctcaatg
aggaggctatcatccaaggaccaagtcttggaggaaagactgaccaattcaattctgatg
actggtggaagctgcctttaccctggtctgagtgagcgcttagaagctggaatccgaatg
attaggccatgtgggtcacctataaaggtggtcagagcacttgatcctgttcttgacgct
tggcgcggggcttctctttatgctgctgcagttcaattcccacaacagacatttagtaga
atggattactttgagaagggtgaagattggcttcgcggataccaatttcaatacacttta
taa
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