KEGG   Populus trichocarpa (black cottonwood): 18103053
Entry
18103053          CDS       T01077                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X2
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    18103053
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    18103053
   03036 Chromosome and associated proteins [BR:pop03036]
    18103053
Enzymes [BR:pop01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     18103053
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    18103053
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     18103053
    Noncanonical PRC1 (PRC1.1)
     18103053
    Noncanonical PRC1 (PRC1.3/1.5)
     18103053
    Noncanonical PRC1 (PRC1.6)
     18103053
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-C3HC4_4 zf-RING_4 zf-UDP zf-rbx1 zf-RING_6 zf-C3HC4_5 ZNF512_C2HC zf-RING_11 zf-Nse
Other DBs
NCBI-GeneID: 18103053
NCBI-ProteinID: XP_006377392
LinkDB
Position
11:4555267..4560757
AA seq 448 aa
MPAQKRSYETLQKEDDALLRQQQDHTNNNHEQKQEPRSDIDDDGGVESDRSQPSSNINED
VKEEYVVVKLSEIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRT
HCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFQEDEKARNKEIQATIAQTFDRQAEA
LSRKRSTAKATAAVFARRTPSRFRDAHSRGRRNYRIAELQGSDDNEDANGGGGKDSSSTD
EHSAEVKPKRYRRCSAAFNADGSGGENDSEVNKESVGASAGLISSSERLAWGKNGMRSHT
RYGSANGSNVKNARNSRISKLADYLRNLDENDNELDINLMLVSFDEQRVPSLQRPYLCCR
PTLSIKSLCQYVAFQTSLQANEVEIYLVQDMNSKLDFSLSMSSPVSRHGIIDPCKDKLQV
LEQHETLGGLKTNNCIHGHLLLAYQKKP
NT seq 1347 nt   +upstreamnt  +downstreamnt
atgccagcccagaaacgttcctacgagaccctccagaaggaagatgatgctcttcttcgg
cagcagcaagaccacactaacaacaaccatgaacaaaagcaagagcctcgaagcgatatt
gatgatgacggtggtgttgaatccgatcgaagccagccttcttcaaatattaacgaagac
gtgaaagaagaatatgttgtagtgaagttgtcggagatacggaaggaagtgcaatgccca
atctgtctagggattattcgtaaaacaagaacagtgatggaatgtctgcatcgtttttgc
agggaatgcattgacaaatctatgcggctcggaaacaacgagtgcccagcttgccgcaca
cattgtgccagtcgtaggtctttgagagacgacccaaattatgatgcactaattgcagct
ttgtatccagatattgacaaatatgaagaagaggaattggctttccaagaagatgagaag
gcacgtaataaggagatccaggctaccattgcccagacttttgatcgacaggctgaagct
ctgagtagaaaacggtcaacagctaaagcgacagcagcagtatttgcaaggagaacacca
agtcgatttcgagatgcccactcaaggggaagaagaaattatcgaatagctgaacttcaa
ggatctgatgacaatgaagatgcaaatggtggtggaggcaaagattcatcatctactgat
gagcacagtgcagaagtcaaaccaaaaagatacaggaggtgttcagctgcttttaatgca
gatggaagtggtggtgaaaatgattcagaagtgaataaagaatctgtgggggcatctgct
gggctcattagctcctcagaaaggcttgcctggggcaaaaatggcatgcggagtcacacc
cggtatggcagtgcaaatggcagcaatgtaaaaaatgctcgaaacagtcgcatctctaag
ttagctgattatctacgtaacttggatgaaaatgataatgagttggatatcaacctcatg
cttgtttcttttgatgaacaaagagtacccagtttgcagcgcccatacctttgctgcagg
ccaactttgtcgattaagagcctgtgccagtatgttgctttccaaacctctttgcaagcc
aatgaagtggaaatatatttggtccaagatatgaattccaagctcgacttttcactctcc
atgagttctccagtttctagacatggtataatcgatccatgcaaagataaattgcaagtt
ttagaacaacacgaaactttgggaggacttaaaacaaacaattgcattcatgggcacctg
cttctggcttatcagaaaaagccgtga

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