KEGG   Populus trichocarpa (black cottonwood): 18103242
Entry
18103242          CDS       T01077                                 
Name
(RefSeq) cullin-4
  KO
K10609  cullin 4
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03420  Nucleotide excision repair
pop04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    18103242
  09124 Replication and repair
   03420 Nucleotide excision repair
    18103242
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    18103242
   03400 DNA repair and recombination proteins [BR:pop03400]
    18103242
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pop04147]
    18103242
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     18103242
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      18103242
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      18103242
Exosome [BR:pop04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   18103242
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 18103242
NCBI-ProteinID: XP_006377604
UniProt: B9N9Q9
LinkDB
Position
11:complement(9425649..9436317)
AA seq 811 aa
MSLPTKRSATATTSTAGTSTSNTYPPMKKAKCQAASACSPLDYNKNGLHHSDDVVFDPSS
MSLDDDPKLVDYRPPPAAANLSRKKATLPQPAKKLVIKLVKAKPTLPTNFEEDTWAKLQS
AIKAIFLKQPALCDLEKLYQAVNDLCLHKMGGNLYLRIEKECEAHISAALQSLVGQSPDL
EVFLKLVATCWKDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKHLSLSPEV
EHKTVTGILRMIERERLGESADRSLLDHLLKMFTSLGIYAESFERPFLECTSEFYAAEGM
KYMQQSDVPDYLKHVESRLNEEQDRCNIYIDASTKKPLIATAETQLLERHISAILDKGFM
MLMDGHRIKDLQTMYSLFLRVNALESLRQALSMYIRRTGQGIVMDEEKDKDMVSSLLEFK
ASLDSIWEESFSKNEGFCITIKDAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEEL
EGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTN
KLEGMFKDIELSKEINESFRQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELN
VYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKL
SFQDIKDSTGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEEDDSFVFNEGFTAPLYRIK
VNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIK
PADLKKRIESLIDREYLERDKNNPQIYNYLA
NT seq 2436 nt   +upstreamnt  +downstreamnt
atgtctctccccaccaaacgctcagccacagccaccactagcaccgccggtacttccacc
tctaatacttaccctccaatgaagaaggccaagtgtcaggccgcctctgcctgctcacct
ctcgactacaacaaaaacggcctccatcactccgatgacgtcgtcttcgatccttcctcc
atgtctctcgacgacgatcccaagctcgtcgactaccgccctcctcccgccgccgctaat
ttgtctcgcaaaaaagctactcttccacagcccgctaagaagctcgtcatcaagctcgtc
aaggctaaaccaactctgcccacaaattttgaggaggatacatgggcaaagctgcagtca
gctattaaggctatattcttgaaacaaccagctctttgtgacttagagaagctttatcag
gctgtcaatgatctgtgcctgcataagatgggggggaatctttatctacgaattgaaaag
gagtgtgaagcacatatatctgcagctttacaatccttagttggtcaaagcccagatttg
gaggttttcttaaaacttgttgcaacgtgctggaaggatctctgtgaccagatgttgatg
atccgtggcatagccttgtatctggacagaacatatgtgaaacaaaccccaaatgtgcgt
tcattgtgggacatgggcttgcagcttttccgcaaacatctttctttgtctcctgaagtt
gagcacaaaactgtcactggcatcttgcgaatgattgagagggaaagattaggtgaatca
gctgatagatctctccttgaccatctcttgaagatgttcacttcactaggaatttatgca
gaaagttttgaaagacctttccttgagtgcacatctgaattctatgctgctgaaggcatg
aaatacatgcagcaatcggatgttccagattacttgaagcacgtggagtcaagattgaat
gaagaacaagatcgatgtaatatttacattgatgcaagcactaaaaagccactaatagca
actgcagaaacgcagctacttgaacgccatatatccgcgattcttgataaggggttcatg
atgctgatggatggacatcggattaaggaccttcagacaatgtactcattgtttttaagg
gtcaatgcccttgagtcattaaggcaggcccttagcatgtacatcagaagaaccgggcag
ggcattgtcatggatgaagagaaggacaaagatatggtttcctccctgttagaatttaag
gcttctcttgactcaatatgggaagaaagcttctccaagaatgaaggattctgcatcacc
ataaaggatgcatttgagcatctaattaatcttcgccagaaccgtcctgctgagctgatt
gcaaagtttttggacgagaagcttcgtgctgggaataagggtacatccgaggaagagttg
gagggtacacttgataaagttttggttttattcaggtttattcagggtaaggatgtcttt
gaagcattttataagaaggatcttgcaaaaagactgctgttgggaaaaagcgcttctatt
gatgcagagaaatctatgatatctaagctgaaaactgaatgtggtagccagtttacaaac
aagcttgaaggaatgtttaaggatattgaactatcaaaggagataaatgagtccttccga
caatcatctcaggccaggacaaaacttccatcagggattgaaatgagtgtacatgtttta
accactgggtactggcccacatatccacccatggatgttaggcttcctcatgagctgaat
gtttatcaggatatattcaaagaattctacttaagcaagtatagtggaaggcgcttaatg
tggcaaaactcattgggtcattgtgtattgaaagctgagtttccaaaaggtaaaaaggag
ctggcagtttctctatttcagactgtcgttctgatgctgtttaatgatgcccaaaagctt
agttttcaagatatcaaagactctactggcatagaagacaaggagcttagaagaactttg
cagtctctggcatgtggaaaagttcgggttctgcaaaagctgcccaaagggagggatgtg
gaggaggatgattcctttgtgttcaatgaaggatttacagctccactctatcgaataaag
gtcaatgcaatccagatgaaggaaactgtagaagagaacacaagcaccactgagagagtg
tttcaggatcgtcaataccaggtcgatgctgcgattgttcggataatgaagacaaggaaa
gtgctaagtcacacgcttcttataactgaactattccagcagctgaagtttcctataaag
ccggctgatttgaagaaaaggatagaaagtcttatcgacagggaatacctggagcgagac
aagaacaaccctcagatatacaattacttggcttaa

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