Populus trichocarpa (black cottonwood): 18103559
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Entry
18103559 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: proteasome activator subunit 4
KO
K06699
proteasome activator subunit 4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03050
Proteasome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03050 Proteasome
18103559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
pop03051
]
18103559
Proteasome [BR:
pop03051
]
Eukaryotic proteasome
Regulatory particles
PA200
18103559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_PSME4_mid
PSME4_C
CLASP_N
HEAT_PSME4
DUF4042
PPP2R1A-like_HEAT
Motif
Other DBs
NCBI-GeneID:
18103559
NCBI-ProteinID:
XP_052301646
LinkDB
All DBs
Position
11:complement(19110555..19123392)
Genome browser
AA seq
1830 aa
AA seq
DB search
MHLYNAWLPPPVVEETKKEKDSFRTVLNSVKNSYKPDDPDSVYSTLKWISVLELFIKAKS
ELNLEDVAELVQFGIELFNISQNKLYAQVRWGNLLVRVLNKYRKRLAFKVQWRPLYDTLI
HTHFTRNTGPEGWRLRQRHFQTISSLVRSCRRFFPAGSALEIWNEFCSLLENPWHNSSFE
GSGFLRLFLPTNLENQDFYTETWVKKSLNMWDSIPNSQFWNSQWAAIIARVIKNYDFIDW
ECFLPMLFSRFLNMFEVPLANGSASYPFSVDVPRYTRFLFSHKTSTPAKAIAKSIVYLLK
PGGAAQELFGKLGNLLEQYYHPSNGGRWTYSLERFLLHLVIMFQKRLQHEQWSTDNNRQA
EMFLGRSERTYFVNVLLKLIDRGQYSKDEHLSETVAAATSILSYVEPTLVLPFLASRFHL
ALETMTATHQLKTAVMSVAFAGRSLCLTSLSTRGKQEDCGGGDDAYVDLLTISLSNALLG
MDANDPPKTLATMQLIGSIFSNIATLDDSTDQLSFMPMIRFSEWLDEFLCRLFSLLQHLE
PSSVLHEGLHSSATSGTFLVDDGPFYYCMLEILLGRLSKSLYNQALRKIAKFVRTSILPG
AVAEVGLLCCACVHSNPEAAVASLVDPILSSVISSLKGTPATGFGGRGIPDATVSIKAKP
TLSPALETAIDYQLKILSVAINYGGPALLRCKDQFKEAIVSAFESPSWKVNGAGDHLLRS
LLGSLIVYYPMDQYKSISRHPAALALEEWISAKDYNSDGPSMGPKWHVPNDDEVQFANEL
LNLHFQSALDDLLKICQNKIHSDTGNEKEHLKVTLLRIDSSLQGVLSCLPDFSPSSRNGI
VEDASHISFLIAGATGSSVGSTGLREKAVEIIHAACKYMLEEKSDDSILLILTVRIMDAL
GNFGSLEYEEWSNHRQAWKLESAAILEPPMNFIVSSHSQGKKRPRWALIDKAYMHSTWRS
SQSSYHLFRMSGNFSPPDHAILLMDDLLKLSLHSYETVRSLAGKSLLKMIKRWPSMISKC
VLSLTEHLRNPSSPEYAVLGSCTVLSTQTVLKHLTTDPKALSSFLLGILSSSHHESLKAQ
KAINELFVMYNIYFPGVSRSIFRTSDNHIDGPNFADLVSQIGSMSFDSSGLHWRYNLMAN
RVPFLLLCDXLLALFISILSTFXWDFHSQFLXHCLTDAFSGHFLKNLKSQLPQTRILAIS
ALNTLLKESPYKLSAENQSAVLEDLQTNAKSSLEGALSEIFQEEGFFNETLNSLSHVHVI
TDIDSTSSRGSHGNSFIQNLADKSITRFYFDFSSSWPRTPSWISLFGSDTFYSNFARIFK
RLIQECGMPVLQALKGTLEEFANAKERSKQCVAAEAFAGVLHSDINGLLGAWDNWIIVQL
QTVILSQSVESIPEWAACIRYSVTGKGKYGTRVPVLRKQILDCLMTPLPPAVNTTVVAKR
YTFLSAALIEISPQKMPVAEIKLHNRLMNELLDNMWHSSAQVREAIGVTLAVLCSNIRLH
LSSAHDYSCEEASEIDNQLKEEKWVLILTHRATDVVTNIQNTSPADNLETAGHTAFQNGS
LNGDAQDDVKWMETLFHFIISTLKSGRSSYLLDVIVQFLYPVLSLQETSNKDLSTLAKAC
FELLKWRIFWAPHLQRAVSVILCSANDPNWRTRSATLTYLRTFMYRHTFILSNVEKQQIW
KTVESLLRDNQVEVREHAATVLAGLVKGGNEDLARDFRERAYLEANTIHRKRKQRNLKTG
QSIASVHGAVLALVASVLSVPYDMPSWLPDHVTLLACFGGEPSPVKSTVTKAIAEFRRTH
ADTWNVQKDSFTEEQLEVLADTSSSSSYFA
NT seq
5493 nt
NT seq
+upstream
nt +downstream
nt
atgcatctctacaatgcgtggctgccaccgccagtggtggaggagacgaagaaagagaaa
gactccttccgcaccgtgctcaactccgtcaagaactcttacaaacccgatgatcctgat
tccgtttactccactctcaaatggatttccgtcctcgaactttttattaaggcgaagagc
gaattgaatttggaagatgtagctgaactcgttcaatttggaattgagttgttcaatatt
tcgcagaataagctttacgctcaggtgagatggggaaatttgttagtgagagtgctaaat
aagtatagaaagaggttggctttcaaagtgcaatggaggcctttgtatgatactcttatt
catactcattttacaaggaacactggtccggaagggtggagattgagacaaaggcatttt
cagactatttcttcacttgttcggtcctgccggaggttctttcctgctggttcggctttg
gagatttggaatgagttctgttctctcttggaaaatccatggcataattcatcctttgaa
ggatctgggtttttgagactgtttttgccgacaaacttggagaaccaggacttctataca
gaaacttgggttaaaaagagcttgaacatgtgggactcgataccaaattcccaattctgg
aacagccagtgggcagctatcatagcacgtgttataaaaaactatgactttattgactgg
gaatgcttcttaccaatgcttttcagtagattcttgaacatgtttgaggttcctttggca
aatggaagtgcttcatatccattttccgttgacgttccaagatacacaagattcttattc
tcccataaaacttccaccccagcaaaggccattgcaaagtcaattgtctatctgcttaaa
cctggtggtgcagctcaagagctcttcgggaaattgggaaacctcttagaacaatattac
catccatctaatggtggtcgctggacttattcactggagcgctttttgcttcatttggta
attatgttccagaagcgcttacagcatgagcaatggagcacagataacaatagacaggct
gaaatgtttcttggaagatcggaaaggacttattttgtcaatgttttactgaagttaatt
gatcgcgggcaatacagcaaagatgaacatctttctgagacagttgctgcagcaacttcc
attttgtcatatgtggagcccactttggttcttccatttttagcatctcgattccatttg
gccttggagacgatgactgccacccaccagttgaaaactgcagtgatgtcagtagcattt
gcaggacgttctctgtgtctcacatccctctcaactcgagggaaacaggaagattgtggt
gggggtgatgatgcatatgtcgatctcttgacaatttcactatccaatgctttacttggt
atggatgctaatgacccccccaaaacattggcaaccatgcagttaattggctccatattt
tccaatattgctactttggatgatagtaccgatcagctatcattcatgccaatgatccgg
ttttctgaatggttggatgaattcttgtgtcgcttattttcattgcttcaacatctagaa
cccagcagcgttctgcatgaaggcctacattcatcggcaacatcaggaacttttcttgtc
gatgatggtcctttctactattgtatgctcgaaatcttgctcggaagactatctaaatcg
ctatacaatcaggctttgagaaaaattgcaaagtttgtgaggacaagtattcttcctgga
gcagttgcagaggttggattgctttgttgtgcttgtgttcattcaaacccagaagcggct
gttgcttctcttgttgatccaatcttgtcatctgttatatcctctttgaaaggaacgcct
gcaacgggctttggagggagagggattccagatgccacagtttcaattaaggccaaacca
acactctctccagctcttgaaacagcaatcgattatcaattaaaaatattatcagttgcc
ataaactatggaggtcctgctcttcttcggtgcaaggatcaattcaaagaagctatcgtg
tcagcttttgaatctccctcttggaaggttaatggagccggtgatcatctccttcgatcc
ctccttggaagcctgattgtttattatcctatggatcaatacaagtccatttcaaggcac
ccagcagctctggcattagaagaatggatcagcgcaaaagattacaacagtgatggacca
tcgatggggcccaagtggcatgttccaaatgatgatgaagttcagtttgcaaatgaactt
ttaaaccttcattttcaatcagctttagatgaccttttgaaaatatgccaaaataaaata
cattccgatacaggaaatgagaaagagcacttgaaagtgactcttttgcgtattgattct
tcactgcaaggtgttttatcttgcttacctgatttcagcccatcctccaggaatgggatt
gtggaagatgcgagtcatatttctttcttgatagctggagcaactggttcaagtgttggc
agtactggactgcgtgaaaaagctgttgagattatacatgcagcttgcaaatatatgtta
gaggaaaaatcagatgacagcatcctcttgatactcactgttcgtatcatggatgctttg
ggaaactttggaagtttggagtatgaggagtggtcgaatcacaggcaggcttggaagttg
gaatctgctgccattttagaacctccaatgaattttatcgtgtcttctcattctcaagga
aagaaaaggcctaggtgggctcttattgacaaggcatacatgcatagtacttggaggtca
tcacaatcatcctatcatctgtttcgtatgagtgggaacttctctccaccagaccatgca
attcttttgatggatgatctgctaaaactttctttgcatagttacgaaactgttcgctcg
cttgctggaaaatctctgctgaagatgattaagagatggccatcaatgatttcaaaatgt
gtgctctctcttactgaacacttgcggaatcccagctcaccagaatatgcagtgctgggt
tcttgtactgtcctttctacacaaacagttctcaagcatttgacaacagatccaaaagca
ttatcttcttttcttcttgggattctttcaagctcgcatcatgaatcactgaaagcccag
aaagctattaatgagctttttgttatgtacaacatctactttccgggagtgtctagaagc
attttcaggacatcagataatcacatagatggaccaaattttgcagatttggtttctcag
attggatcaatgagttttgattcttctggtttgcattggcggtacaacctaatggctaac
agagtacctttcctgttactttgtgattgactccttgcccttttcatcagcattctttcc
acattttaatgggattttcactcacaatttctttgacattgtcttactgatgccttttca
ggccactttcttaaaaatttaaaaagtcaacttcctcaaacaaggatacttgcaatctca
gctctaaatacactattaaaagagtcaccatacaagctctctgctgagaatcaatctgca
gtactagaggatttacagacaaatgccaaatcatctctcgaaggggcattaagtgaaatt
tttcaggaagaagggttctttaacgagactttgaatagcctgtctcatgttcatgtaatc
actgatattgatagcacttcttccagaggaagtcacgggaattcttttatccaaaacctt
gcagacaaatcaattacccgtttttattttgatttttcatcttcatggccacgcactcct
agttggatttctctatttggaagtgatactttctactccaactttgcacgaatctttaag
cgcctaatacaagaatgtggcatgcctgtcttacaagcacttaaaggaacactggaggag
tttgcaaatgctaaggaaaggtctaagcagtgtgttgctgctgaagcatttgctggggtg
ttgcactctgatatcaatggtcttttaggagcatgggacaactggataatagttcagttg
cagactgtgattctttcccagtcagtggaatctattccagagtgggcagcatgtatacgc
tattcagttacaggaaaaggaaaatacggtacaagagtccctgttctgaggaaacagatt
ttggattgtttgatgacacctttacctcctgctgtaaataccactgttgttgcaaagcgc
tacacttttctttcagctgctctcatagagatatccccacaaaagatgccagtggctgag
ataaaactccataacagacttatgaatgagctgttggataacatgtggcactcatcagcg
caagtaagggaagctataggtgttaccctggctgtgctgtgctctaacattcgtcttcac
ttgtcatctgctcatgattattcttgtgaagaggcaagcgagattgacaaccaattgaaa
gaggaaaagtgggtcctaattctgactcaccgagctactgatgtggtcacaaatattcag
aatactagtccagcagacaacttggagactgctgggcatacggcttttcaaaatgggtct
ttgaatggggatgcacaagatgatgttaagtggatggaaacgctatttcattttatcatc
tcaacgttgaagtctggcagatcttcttatttactggatgttattgtgcaatttctctat
cctgtactttctttgcaggaaacatcaaataaagatttgtcaacactggccaaggcatgt
tttgaattgctgaaatggagaattttctgggcacctcatctccagagggctgtttcagtg
attctttgttctgccaatgatccgaactggcggacccgatcagctactttgacatatctg
cgtacttttatgtataggcatactttcatcctctcaaatgtggaaaaacaacaaatttgg
aaaactgttgaaagtctcctgagagataatcaagtagaggtaagggagcatgctgcaaca
gttctagcaggtctagtgaagggtgggaatgaagatcttgctagagacttccgtgaaaga
gcttacttggaggcgaataccatccataggaagagaaagcaaaggaatctgaaaactggc
caatctatagcatctgttcatggtgctgtacttgctttggtggcttctgtgttgtcagtt
ccatatgatatgcccagttggttgcctgatcatgttactctactggcttgttttggagga
gagccttcacctgtgaaatctacggttacaaaagcaatcgctgagttccgacgaactcat
gcggacacatggaatgtccagaaagattcatttactgaagaacaactcgaggttctagca
gatacatcgtcctcatcatcatattttgcttga
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integrated database retrieval system
