Populus trichocarpa (black cottonwood): 18104012
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Entry
18104012 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18104012 isoform X3
KO
K23002
RNA polymerase II-associated protein 3
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
18104012
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
18104012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP3_C
TPR_1
TPR_2
TPR_8
TPR_12
TPR_11
TPR_BSK1_C
TPR_14
TPR_16
TPR_10
TPR_CcmH_CycH
ARM_TT21_C
TPR_19
TPR_9
Coatomer_E
ANAPC3
HAGH_C
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
18104012
NCBI-ProteinID:
XP_006375724
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All DBs
Position
13:539447..544451
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AA seq
462 aa
AA seq
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MARAPGKHGRDQALDWELLKDTDKKMKKKSQASDMKIGEDERSTGKTSAVDFSSSSGMYD
HARNFDAINRLSNSFAIDESTVDATTEKELGNEYFKQKKYKEAIECYSRSIALSPTAVAY
ANRAMAYLKIKRFPEAEDDCTEALNLDDRYIKAYSRRATTRKELGKLKESIEDSEFALKL
EPNNQEIKKQYAEVKSLYEKEILQKASESLRSSLQGAQKGGRSEASVNGHAVHPVSNVTQ
RTGASASQKDKAKENDGDGVVKKYVYVEEIKNKSTGAGSRSDGQLGNDSRANAIPSSNAE
SIQRNNRTGRQELKASVKELASQAASRAMAEAAKNITPPNSAYQFEVSWRGFSGDRALQA
HLLKVVTPSALPQIFKNALSVTILIDIIKCVSSFFIDDMDLAVKYLENLTEVPRFDILIM
CLPSTDKADLLKMWDEVFCSEATPIKYAEILDKMRSRYCPKC
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggctagggctccaggcaagcatggacgtgatcaagctctggattgggaacttcttaag
gacactgataaaaagatgaagaagaagtcacaagcttctgatatgaagattggtgaggat
gaaagatcaacagggaaaacttctgctgttgatttttcaagtagttcaggaatgtatgat
catgcaaggaactttgatgcaatcaatcgcctatcaaatagttttgcaattgatgagagt
actgttgatgctaccacagagaaagaattgggaaatgagtattttaagcagaagaagtat
aaggaagctattgagtgctattcaagaagcatagcgttgtcaccaacagcagtagcctat
gcaaatcgagcaatggcatatctcaaaatcaaaagatttccagaggctgaagatgactgt
accgaggctttgaatctagatgatcgctacataaaagcatactcacgcagagcaacaaca
agaaaggaattgggtaaacttaaagaatccatcgaggattctgagtttgctttgaaactg
gaacctaataaccaggaaatcaagaaacagtatgctgaggtcaaatctttgtacgagaag
gaaattctccagaaagcatctgaatctctcagaagctccttacaaggagcacaaaaagga
ggaaggtcagaagcaagtgtcaatggacatgcagtgcatccagtctcaaatgtcactcaa
aggactggggcatctgcttctcaaaaagataaagctaaggagaatgatggagatggtgtt
gtgaagaaatatgtctacgtggaagagataaagaacaaaagcacaggagctggaagcaga
tctgatggtcaattaggcaatgattctcgtgcaaatgctattccaagttctaatgcggag
agtatccagagaaataacagaactggaaggcaggagctgaaggcctcagttaaagaactc
gcttctcaagcggcttctcgagccatggctgaagctgcaaaaaacattacacctccaaac
tcagcttatcaattcgaggtttcttggcgaggcttttctggtgatcgtgcactccaggct
cacctcttgaaggtagtaactccaagtgcattgcctcagatatttaagaacgcattgtct
gttactattctaatcgacatcatcaagtgtgtgtcctcatttttcatcgatgacatggat
ttggctgttaaatatctagagaacttgaccgaagtcccaagatttgacattcttatcatg
tgtcttccatctacagataaagctgatcttctcaagatgtgggatgaagttttctgtagt
gaagcaacgccaatcaaatatgctgagattctcgacaaaatgcgatccagatactgtcct
aaatgttaa
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