Populus trichocarpa (black cottonwood): 18104198
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Entry
18104198 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18104198
KO
K18735
protein SMG9
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18104198
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
18104198
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NB-ARC
MMR_HSR1
ABC_tran
AAA_18
RsgA_GTPase
AAA_16
FeoB_N
MeaB
SET1_RBD
Spore_III_AA
nSTAND3
DUF5906
AAA_29
DO-GTPase2
DUF2867
AAA_28
Motif
Other DBs
NCBI-GeneID:
18104198
NCBI-ProteinID:
XP_006376009
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All DBs
Position
13:complement(7251780..7257994)
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AA seq
411 aa
AA seq
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MNEMAGSSSSQSQAPKILLAKPPGLVTSGPAVSAAAAKFGREDETAPHHHHRSRLPSITS
LNLLSDSWDFHIDRFLPFLTENTDFTVVGIIGPPGVGKSTILNELYGFDGTSPGMLPPFT
VQSEDNRAMARHCSVGIEPRISAERLILLDTQPVFSPSVLAEMMRPDGSSTISVLSGENL
STELAHELTAIQLGVLLASICHVLLVVSDGVYDDSMRHLMLTVDLLKHGIPDPSSLNSAY
LQSSNAGTEKENKDKVSEAEEYMATPLFVHTKLQDKDFTPCNFVELRKELAQYFSSSSFI
KEKGGSMEKEQISYSVPSNSHDNDPDSKSINLFVIPLKDKDDSLKAQYKSYISALWKLRD
QVLSMNGLSFARTVSERDWLKNSAKIWELVKGSAIIAEYGQALQGSGMFRR
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaatggcagggagttcttcatcacagtcacaggctcccaaaatcctactagca
aagcctcccggattggtgacttctggaccagcggtgtctgccgctgctgctaaatttgga
cgcgaagacgaaacagcgccgcaccatcaccatcggtctcgtctcccttcaattacctct
ctcaatctcctctccgattcttgggacttccacattgatcgctttctccctttcctgacg
gagaatacagattttacagtggttggaataattgggccgcctggggttggcaagtccaca
atcttgaatgagctttatggctttgatggaacctcgccagggatgcttccgccgtttact
gtgcagtctgaagataaccgagcaatggcaaggcattgttctgtgggaattgaacccagg
atatctgctgagaggcttattcttcttgatacccagcctgtttttagcccttctgttttg
gcagagatgatgagacctgatggctcatccacaatttcagttttaagcggtgaaaacctt
tctactgagttggctcatgaacttacagctattcagcttggtgttctcctagcttccatt
tgtcatgtcctgctggtggtatcagatggagtttatgatgatagtatgcggcacttaatg
ttgacggttgacttgctgaaacatggcatacctgatccatcttcactaaactctgcatat
ttgcagagctctaatgcgggaactgaaaaagaaaacaaggataaagtctctgaggctgaa
gagtatatggctactccactctttgtacatacaaagctgcaagataaagattttactcca
tgtaattttgtggaactgaggaaggaactagcacaatatttcagctcctcatcattcatc
aaagaaaagggtggaagcatggaaaaagagcagatctcttattctgtgccttcaaacagt
catgataatgatccagattcaaaatctatcaatttatttgtcattccattaaaggacaaa
gatgactctcttaaagctcagtacaaaagttacatctctgcactatggaagttgcgagat
caggttttatcaatgaacggcctgtcctttgctaggacagtctcagaacgtgactggttg
aaaaattctgccaagatctgggaattagttaaaggctctgcaatcattgcagagtatggc
caagcacttcaaggttcagggatgtttcggaggtag
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