Populus trichocarpa (black cottonwood): 18104229
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Entry
18104229 CDS
T01077
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18104229
09122 Translation
03013 Nucleocytoplasmic transport
18104229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18104229
03041 Spliceosome [BR:
pop03041
]
18104229
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
18104229
Spliceosome [BR:
pop03041
]
Complex C
Other components
EJC/TREX
18104229
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
18104229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
18104229
NCBI-ProteinID:
XP_024439899
LinkDB
All DBs
Position
13:7717771..7747366
Genome browser
AA seq
1882 aa
AA seq
DB search
MSTTLPPMECLHVTEEFLLELKSGNRSFRLPHPVPILRFLYELSWTLVRGELPFQKCKAA
LDSVEFVDKMSAVGLGSNFADIITQMAQDLTMSGEYRSRLIKLAKWLVESALVPLRFFQE
RCEEEFLWEAEMIKIKAQDLKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRGSE
DTAENTSAATIGIIKSLIGHFDLDPNRVFDIVLECFELQPDSNVFLELIPIFPKSHASQI
LGFKFQYYQRMELNSPVPFGLFKLTALLVKEEFIDLDSICAHLLPKDDEAFEHYNTFSSK
RLDAAYKIGKINLAATGKDLMDDEKQGDVTVDLFAALDMETEAVAEQFSDLEKNQTLGLL
TGFLSVDDWYHAHILFKRLSPLNPVAHTQICGGLFRLIEKTISSAYNIIRQPHVQNCGSP
AVAGIDAMDVTSSSGHVSLIDLPKEFFQMLVTVGPYLYRDTLLLQKVCRVLRGYYMSALE
LVDSGDGALNGESLIPRNRVLRLHLREGRSMVEEALGACLLPSLQLVPANPAAGQEIWEV
MSLLPYEVRYRLYGEWEKDDERNPLVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLA
HANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDG
LNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELVQQMANVQY
TENLTEEQLDAMAGSETLRYQATSFGVTRNNKALFKSTNRLRDSLLPKDEPKLAIPLLLL
IAQHRSVVVINADAPYIKMVSEQFDRCHGTLLQYVEFLCGAVTPPSAYAQLIPSLDDLVH
LYHLDPEVAFLIYRPVMRLFKCEGSLEVFWPLDSNETVTTTSANLEPEAREYSGRVILDL
GSLHKPVMWSDLLETLKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRNRYESEIAKQQA
ALKALEELSDNSSSAITKRKKEKERIQESLDRLTSELHKHEENVSSVRRRLSREKDKWLT
SCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTL
QPMICCCTEYEAGRLGRFLYETLKIAYYWKSDETIYERECGNMPGFAVYYRFPNSQRVTY
GQFIKVHWKWSQRMSRLLIQCLESSEYMEIRNALILLTKISGVFPVTKRSGINLEKRVTR
IKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLDIKPPSVASKSLSGNVAAAQNS
SALNVSQGEPADGRALVTGSQHGDPGNSNRDPISRAKHADGRSDRTENISHLKSDLGHQK
SKGGSSTNGSNAQSAVSSAAVPIGASRSAENQKGMDDSTNRTLEDSTVRVAAKNLAESEL
KVSTKRPVSKTPKQDVVKDDNKSGKGVGRTLSSSTSDKDIQVHLSEGRQGGASNVSSVLT
SNGNALSVSEKVSTMVTRTSDSYGVESKPDSGGNKPMLKDEATEVADVQKPPSRLVHSPR
HDNSVAASKSSDKLQKRASPAEEPDRLSKRQKGDVELRDLEGEVKFSERERSTDTRSADL
DKVGNDEHNLYRSVDKPLDRSKDKGNDRYDRDHRERSERPDKSRGDDSLADRSRDKSMER
YGRELSVERGQDRVADRSFDRLADKAKDDRSKLRYNDTSAEKSQVDDRFHGQNLPPPPPL
PPHMVPQSVTSGRRDEDADRRFGTTRHVQRLSPRHDEKERRRSEENSLVSQDDAKRRKED
DVRERKREEREGLSIKVEEREREREREKTNLPKEEMDSSATAKRRKLKRDHLPTGEAGEY
SPVAPPPPPLGIGISHSYDGRERGDRKGAMNQRASYLEEPLMRIHGKDVVGKMGRRDTDP
MYDREWDEDKRQRAEQKRRHRK
NT seq
5649 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaactctccctcccatggagtgtttacacgtaactgaagaatttctcctcgaa
ttaaagagcggaaaccgtagcttccgtctccctcaccctgtacctattcttcgatttctc
tacgagctatcctggaccttggttcgaggagaattgccgtttcagaagtgcaaagctgct
ttggattctgtggagtttgttgataaaatgtctgctgtagggttgggttcgaatttcgct
gatatcattactcaaatggctcaagatcttacaatgtctggagagtaccgatctcgtctc
ataaagctggcaaaatggctagttgaatctgcgttggtcccattgaggtttttccaagag
cgttgtgaggaggaatttttatgggaagctgaaatgataaagataaaggctcaagacttg
aagggcaaagaggtcagggtaaatactcgtcttctttatcagcaaacaaaatttaacctt
ctccgtgaagagagtgagggctatgccaaactggttactcttctctgtcgaggttctgaa
gatacagctgaaaatacatcagcagcgacaataggcatcattaagtcattgatcggtcat
tttgatctggacccaaatcgtgttttcgacattgttttagagtgttttgaacttcagcct
gatagcaatgtctttttggaactgattcccatatttcctaagtcgcatgcatcacaaatt
cttggttttaagtttcagtattatcagcgaatggaattaaatagccctgtaccatttggg
ctctttaagcttacagccttactagtgaaggaagagttcattgatcttgatagtatatgt
gcacatttactccctaaggatgatgaggcttttgagcattataacacgttttcttccaaa
cgattggatgcggcctacaaaattggaaaaataaatctggctgctactggaaaggacctc
atggatgatgagaagcaaggagatgtgacagtagatctttttgctgccttagacatggaa
actgaggcagtagctgaacaattctctgatcttgaaaaaaatcaaactttgggcttgctg
actggtttcctttctgtggatgactggtatcatgcccatatacttttcaaacgtctctct
cctctaaatcctgttgcacatactcaaatatgtggtggcttgtttaggctcattgaaaag
acgatctcatcagcatataatattattcgtcaaccacatgttcaaaattgtgggtctcca
gcagttgctggtattgatgccatggatgtgacaagttcttcaggccatgtctctttaatt
gatcttcccaaagaattttttcagatgcttgtaacagttggaccttatctttaccgtgat
acgttattgctgcagaaggtttgtagagtgttaagaggttactatatgtctgcacttgag
cttgtagatagtggtgatggagctctaaatggtgaatctcttattcctagaaatcgagtt
cttcgtttgcacctaagggaaggtaggtcaatggttgaggaagccctgggagcatgttta
cttccttctttacagttggtacctgcaaatccagcagctgggcaggagatctgggaagta
atgagtctccttccatatgaggtgcgatatcgtttatatggtgaatgggaaaaagatgat
gagcggaatccattggttttggctgcaaggcaaacagccaagttggatactagaaggata
ttgaaaaggcttgcgaaggaaaatttgaagcagctgggtaggatggttgcaaaattagcg
catgctaacccgatgactgtccttcgaactattgttcatcagattgaggcatacagggat
atgatcactcctgttgtggatgctttcaagtatttgacacagcttgagtatgatatcttg
gaatatgttgtaattgagcggttagcacaaggtggtcgtgataagctcaaggatgatggc
cttaatttgtcagactggcttcaatcactggcttcattctggggtcacctgtgtaagaag
tacccatctatggaattgagaggccttttccagtatttagtgaaccagttgaaaaagggc
caggggattgagcttgttcttctgcaggagcttgttcaacaaatggcaaatgttcaatac
acagaaaacttaacagaggaacagttggatgccatggcagggagtgagacacttcggtat
caagctacttcttttggagtaacacggaataacaaggcgttgttcaaatctactaacagg
cttcgagactccttgcttcctaaggatgaaccaaagctagcgatcccccttttgttactt
attgctcaacatcgatctgtggttgtcataaatgcagatgctccttacattaaaatggtc
agtgagcagtttgataggtgtcatggaactcttcttcaatatgtggaattcctctgtggt
gctgtgacaccaccctctgcatatgctcagttaattccctctcttgatgatcttgtccac
ctgtatcatcttgatcctgaggttgcatttttaatataccgcccagtcatgagactcttc
aagtgtgagggtagtttagaggttttctggcccttagacagcaatgaaacagtaactact
acaagtgcaaacctggagcctgaagctagagaatattctggcagagtgattctggatctt
ggctctctccataagcctgtaatgtggtcagatcttcttgagactctgaaaaccatgttg
ccttcaaaagcctggaatagcctctcacctgatctctatgccactttctggggactcaca
ctttatgatctatatgtccctagaaaccgttacgagtctgaaattgccaagcagcaagct
gctcttaaagcgctggaagagctttctgataattctagttcagcaattactaaaaggaag
aaagagaaggaaaggattcaagaatctctcgatcgtctgactagtgagctccataaacat
gaagaaaatgtttcttctgttcgtagacgactatctcgtgagaaggacaaatggctgact
tcttgtcctgatactttgaaaatcaacatggagttccttcagcgctgtatttttccccgt
tgtactttcagcatgccggatgctgtatattgtgccatgtttgtacatactcttcattca
cttggcacaccatttttcaacactgtaaaccacatcgatgttctgatatgtaaaacatta
caacctatgatatgctgctgtactgaatatgaagcaggtagacttgggaggtttttgtat
gaaacactcaagattgcttactactggaagagtgatgaaactatatatgaacgtgagtgt
ggaaatatgcctggatttgctgtgtattatagattcccaaacagccaacgggttacatat
ggtcagttcattaaggtacactggaaatggagtcagagaatgtctcggctattgattcag
tgtctggaatcatctgagtacatggaaattcgaaatgctcttattttgttgacaaaaatt
tccggtgtttttccagttactaaaaggagtggtattaaccttgaaaaacgagtaactaga
atcaaaagtgatgaaagggaggatctcaaggttttggctacaggtgttgctgcagctttg
gctgctagaaagccttcatgggttacagatgaagaatttggcatgggatatcttgacata
aagcctccatctgttgcatcaaagtctttatctggaaatgtagcagcagcacaaaacagt
tctgcccttaatgtttctcaaggtgaacctgctgatggaagagcacttgtaactggaagc
caacatggagatcctgggaattcaaacagagatccgatatccagagcaaaacatgctgat
gggaggtcagatagaacagaaaatatctcacatttgaaatctgatctaggacatcagaaa
tcaaaaggtggttcatcaaccaatgggtcaaatgctcagtcagctgtttcctcggctgct
gttcctataggtgcatcaagatcagcagaaaatcagaaggggatggatgactccacaaat
agaacattggaggatagcactgtcagagttgctgcaaagaacttggcggagtctgagttg
aaagtttccacaaagcggccagtgtctaaaacaccaaagcaagatgttgtgaaagatgac
aataaatctggaaaaggtgttggccgaactctatcctcatccacaagtgacaaagacatc
caggttcatttatcagagggaagacaagggggtgcttctaatgtttcttctgtgctcaca
tcgaatggtaatgctctttcagtgtctgaaaaagtctctactatggttacaagaacttct
gattcttatggtgtagaatcaaagccagatagtggaggtaacaaacctatgctaaaagat
gaagcaactgaagttgctgatgtgcagaagccaccttctcgacttgttcattctcctagg
catgataactctgttgctgcttcaaagtctagtgataaattgcaaaagagagcaagtcct
gctgaagaacctgacagattaagtaaaaggcaaaaaggggatgtcgaattgagagattta
gagggtgaagttaaattctctgaaagagagaggtccaccgatactcgatctgcggatctt
gataaagtgggaaatgatgaacataatctatataggagcgtagataaacctttggatagg
tcaaaagataaaggtaatgatagatatgacagggaccatagggaaagatcagagcgtcct
gataaatcccgtggagatgatagtttagctgacagatcgagagataaatcaatggaaaga
tatggaagagagctttcggttgagagagggcaggatagggtcgctgataggagttttgac
agactagctgacaaagccaaagatgacagaagcaaattacgttacaatgatacctctgca
gaaaaatctcaggttgatgatcgttttcatgggcaaaacttgcctccgccaccaccttta
cctcctcatatggttccccaatcagttacttctggtagaagagatgaagatgctgacaga
aggtttggaactaccagacatgttcagaggctttctcctaggcatgatgagaaagaacga
agacgatcagaagaaaattccttggtttcacaggatgatgcaaaacgtagaaaagaggat
gatgttcgtgagagaaagcgagaagagcgagaggggctgtcaatcaaggtggaagagagg
gaaagagagagggagagggagaaaaccaaccttccgaaggaggaaatggactccagtgca
actgccaagagacgaaaacttaaaagagatcatctgccgacaggggaagctggtgaatat
tctcctgttgccccaccacctccaccccttggtattggcatttcacattcatatgatggt
agggagaggggagataggaagggggccatgaatcagcgtgcaagttacttggaggaacct
ctcatgaggattcatggtaaagatgtagttggcaagatgggccgccgtgatactgatcct
atgtatgatcgggaatgggatgaggacaagaggcagagagctgaacaaaagcggaggcat
cgcaagtaa
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