Populus trichocarpa (black cottonwood): 18104389
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Entry
18104389 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18104389 isoform X1
KO
K15707
E3 ubiquitin-protein ligase RNF170 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
18104389
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
18104389
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
18104389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1232
RING_XB3-XBAT31
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
18104389
NCBI-ProteinID:
XP_006376216
LinkDB
All DBs
Position
13:complement(11449258..11455782)
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AA seq
185 aa
AA seq
DB search
MDGPPGNDCCAICHGHFNIACQANCSHWFCGDCIMLVWHHGSVLQPCKCPLCRRQITLLV
PGEASLRERNDPHVAEVLGKIERYNHLFGGNTSSLVQRMQDLPFLLRRLLREIMDPQRSL
PVVIKARVYIAMVLSAVYIISPVDIIPEGILGIVGLLDDLLIVLICFLHVAAIYRSVLYY
RHGGS
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atggatggacctccagggaacgattgttgcgccatatgccatggacacttcaacattgct
tgtcaggccaattgctctcattggttttgcggtgattgtattatgcttgtttggcatcat
ggatctgtactccagccatgtaaatgtccgctgtgtcgtcgacagattacattgttggtt
cctggtgaagcttcattaagggagcgcaatgatcctcatgttgctgaggttcttggaaaa
attgaaagatacaatcatctttttggtggaaataccagtagtcttgttcagagaatgcaa
gaccttccatttcttctccggaggttgttgcgagaaataatggatccccaaagatctctt
cctgtggtcatcaaggcacgtgtctacattgcaatggtattaagtgctgtctacatcatc
agccctgtagacattattccagaaggaattttgggaatagttggtctcttggatgatctc
ctcatagtgctcatctgctttcttcatgttgctgccatctaccggtcagtgctctattat
cgtcatggaggttcttga
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