KEGG   Populus trichocarpa (black cottonwood): 18104533
Entry
18104533          CDS       T01077                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 8B
  KO
K03016  DNA-directed RNA polymerases I, II, and III subunit RPABC3
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03020  RNA polymerase
pop03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    18104533
  09124 Replication and repair
   03420 Nucleotide excision repair
    18104533
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pop03021]
    18104533
   03400 DNA repair and recombination proteins [BR:pop03400]
    18104533
Transcription machinery [BR:pop03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     18104533
  RNA polymerase III system
   RNA polymerase III
     18104533
  RNA polymerase I system
   RNA polymerase I
     18104533
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      18104533
SSDB
Motif
Pfam: RNA_pol_Rpb8
Other DBs
NCBI-GeneID: 18104533
NCBI-ProteinID: XP_006376377
UniProt: U5FVM2
LinkDB
Position
13:complement(12925630..12929238)
AA seq 148 aa
MSSSNIIMFEDIFVVDKLDPDGKKFDNVTRIEAHSQNCDMFMHLDVNTDVYPMFVNDKFT
MALAHTLNLDGTPDTGYYTQGGRKTLADKYEYVMHGKLYQIQEEGSRRATRTEMVITFGG
LLMLLKGDPSYVSQFELDQRLFCLIRKL
NT seq 447 nt   +upstreamnt  +downstreamnt
atgtcaagctcaaacatcatcatgtttgaagatatttttgttgttgacaaactagatcct
gacggcaaaaaatttgacaatgtgacccgcattgaagcacatagtcagaactgtgatatg
ttcatgcaccttgatgtgaacactgatgtataccccatgttcgtgaatgacaaattcaca
atggctttggcccatacgctgaatctggatgggacacctgacacaggctattatactcag
ggagggagaaaaacactcgctgacaaatatgaatatgtcatgcatgggaagctatatcag
attcaagaggaaggatcaaggagggcaactcgaacggagatggttattacatttggtggg
cttctgatgttgttgaagggagatccttcatatgtctctcaattcgagcttgatcagagg
ctattttgtctgatcaggaagctgtga

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