KEGG   Populus trichocarpa (black cottonwood): 18104875
Entry
18104875          CDS       T01077                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3 isoform X1
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pop03009]
    18104875
Ribosome biogenesis [BR:pop03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    18104875
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st NBCH_WD40 EIF3I Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_WDR41 ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_IP5PC_F Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd WD40_Gbeta Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_HPS5 Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_WDR75_2nd Beta-prop_LRRK2 Beta-prop_ACSF4 WDR54 PEP5_VPS11_N Beta-prop_DCAF12 WD_LRWD1 VPS11_N Beta-prop_NUP159_NUP214 Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 18104875
NCBI-ProteinID: XP_006374918
LinkDB
Position
14:1690971..1694600
AA seq 450 aa
MNTKMEEIVIASSSIDGGIGCWDLQTGTEHLRYKSCASPPHGLISVGRRFLASSQLQDPK
ASSGAILYWSWSRPQVEVKCFPEEPIKPLVANSEGTYLVGGGLSGNIYFWEVATGRLLKK
WRAHYRAVTCLVFTEDDSLLVSGSEDGSVRVWPLLMIFDDYQMEQASQLYEHSFQEHTLR
VTDIVTGYGGGNAIIISASEDRTCKVWSLSKGILLRNIVFPSIIDSITLDPGEHVFYAGG
RDGKIHIAALGADSSSIKSHWLHIIGSLSSHSKSVTCLAYSTNGNVLLSGSEDGMIRVWD
PKTHNIVRVFKHAKGPVNNIHVLNRPAYLNPRSLSNVQASSRRHGLSLPPPLSKYINTMD
EKVISAAVNLQATCNNPLDASCISSQVINCQIKELQQQGSAAAAEMEVEKLKLDCTQSMQ
MLQRWKKTYDNLHEFCVDELLEGDNVKSAN
NT seq 1353 nt   +upstreamnt  +downstreamnt
atgaacaccaaaatggaagagattgtcatagcatcctcctcaatcgacggcggcataggt
tgttgggacctccaaacaggaaccgaacaccttcgctataaatcctgcgcctcccctcct
cacggccttatttcagttggccgccgcttcctcgcctcttcccagttacaggaccctaaa
gcatcttcaggcgccatcctctactggtcctggtctaggcctcaggtggaggttaagtgc
tttcctgaggagccaataaagccgcttgttgctaatagtgaaggaacttatcttgttgga
ggtggtttatctgggaatatttacttttgggaggttgctacaggtagattacttaagaaa
tggcgtgcccactacagggctgtcacttgcttggtttttacagaagatgattctcttttg
gtttctggttctgaggatggatctgtccgagtctggccacttctcatgatatttgatgat
tatcaaatggagcaggcaagccagctttacgaacatagctttcaagagcatactttgcgc
gtcactgatatagtaacaggttatggaggaggcaatgcaattataatttcagcttccgag
gatcgaacgtgtaaggtgtggagtttatctaaggggatattattaagaaatatagtgttt
ccctcaataattgattcaattacgttggaccctggtgaacatgtattctatgctggtggc
agagatggtaaaatacacattgctgcgctcggtgctgatagctcatctatcaaaagtcat
tggttgcatatcattggttcattatctagtcacagtaagagtgtaacttgcttagcatat
agtacaaatggaaatgtcttgctttctggatcagaagatggcatgattcgagtttgggac
ccaaaaacgcataacatagttcgcgtgttcaagcatgcaaaaggtcctgtaaacaatatc
catgttcttaatcgaccagcttacttgaaccctcgaagcttatcaaatgtacaagcttct
tcaagaaggcatggattatcattaccacctccactcagtaaatatatcaatacaatggat
gaaaaagtcattagtgcagccgttaatctccaggctacttgcaataaccctctagatgct
tcatgcatcagctctcaagtgattaattgtcaaatcaaagaactccagcaacaaggttca
gctgctgcagctgaaatggaggtggagaagctaaagcttgattgcacgcaatcgatgcaa
atgcttcagaggtggaagaaaacgtatgacaacttgcatgaattttgcgtggacgagctt
ttagagggggataatgtgaaaagtgcaaattag

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