Populus trichocarpa (black cottonwood): 18104875
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Entry
18104875 CDS
T01077
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3 isoform X1
KO
K14829
pre-rRNA-processing protein IPI3
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pop03009
]
18104875
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
18104875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML
NBCH_WD40
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IP5PC_F
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_VPS8
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_2nd
Beta-prop_LRRK2
WDR54
PEP5_VPS11_N
Beta-prop_DCAF12
WD_LRWD1
VPS11_N
Beta-prop_NUP159_NUP214
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
18104875
NCBI-ProteinID:
XP_006374918
LinkDB
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Position
14:1690971..1694600
Genome browser
AA seq
450 aa
AA seq
DB search
MNTKMEEIVIASSSIDGGIGCWDLQTGTEHLRYKSCASPPHGLISVGRRFLASSQLQDPK
ASSGAILYWSWSRPQVEVKCFPEEPIKPLVANSEGTYLVGGGLSGNIYFWEVATGRLLKK
WRAHYRAVTCLVFTEDDSLLVSGSEDGSVRVWPLLMIFDDYQMEQASQLYEHSFQEHTLR
VTDIVTGYGGGNAIIISASEDRTCKVWSLSKGILLRNIVFPSIIDSITLDPGEHVFYAGG
RDGKIHIAALGADSSSIKSHWLHIIGSLSSHSKSVTCLAYSTNGNVLLSGSEDGMIRVWD
PKTHNIVRVFKHAKGPVNNIHVLNRPAYLNPRSLSNVQASSRRHGLSLPPPLSKYINTMD
EKVISAAVNLQATCNNPLDASCISSQVINCQIKELQQQGSAAAAEMEVEKLKLDCTQSMQ
MLQRWKKTYDNLHEFCVDELLEGDNVKSAN
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccaaaatggaagagattgtcatagcatcctcctcaatcgacggcggcataggt
tgttgggacctccaaacaggaaccgaacaccttcgctataaatcctgcgcctcccctcct
cacggccttatttcagttggccgccgcttcctcgcctcttcccagttacaggaccctaaa
gcatcttcaggcgccatcctctactggtcctggtctaggcctcaggtggaggttaagtgc
tttcctgaggagccaataaagccgcttgttgctaatagtgaaggaacttatcttgttgga
ggtggtttatctgggaatatttacttttgggaggttgctacaggtagattacttaagaaa
tggcgtgcccactacagggctgtcacttgcttggtttttacagaagatgattctcttttg
gtttctggttctgaggatggatctgtccgagtctggccacttctcatgatatttgatgat
tatcaaatggagcaggcaagccagctttacgaacatagctttcaagagcatactttgcgc
gtcactgatatagtaacaggttatggaggaggcaatgcaattataatttcagcttccgag
gatcgaacgtgtaaggtgtggagtttatctaaggggatattattaagaaatatagtgttt
ccctcaataattgattcaattacgttggaccctggtgaacatgtattctatgctggtggc
agagatggtaaaatacacattgctgcgctcggtgctgatagctcatctatcaaaagtcat
tggttgcatatcattggttcattatctagtcacagtaagagtgtaacttgcttagcatat
agtacaaatggaaatgtcttgctttctggatcagaagatggcatgattcgagtttgggac
ccaaaaacgcataacatagttcgcgtgttcaagcatgcaaaaggtcctgtaaacaatatc
catgttcttaatcgaccagcttacttgaaccctcgaagcttatcaaatgtacaagcttct
tcaagaaggcatggattatcattaccacctccactcagtaaatatatcaatacaatggat
gaaaaagtcattagtgcagccgttaatctccaggctacttgcaataaccctctagatgct
tcatgcatcagctctcaagtgattaattgtcaaatcaaagaactccagcaacaaggttca
gctgctgcagctgaaatggaggtggagaagctaaagcttgattgcacgcaatcgatgcaa
atgcttcagaggtggaagaaaacgtatgacaacttgcatgaattttgcgtggacgagctt
ttagagggggataatgtgaaaagtgcaaattag
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