Populus trichocarpa (black cottonwood): 18105080
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Entry
18105080 CDS
T01077
Name
(RefSeq) protein mago nashi homolog
KO
K12877
protein mago nashi
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18105080
09122 Translation
03013 Nucleocytoplasmic transport
18105080
03015 mRNA surveillance pathway
18105080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18105080
03041 Spliceosome [BR:
pop03041
]
18105080
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
18105080
Spliceosome [BR:
pop03041
]
Complex C
Other components
EJC/TREX
18105080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mago_nashi
Motif
Other DBs
NCBI-GeneID:
18105080
NCBI-ProteinID:
XP_006375160
UniProt:
A9P9K6
LinkDB
All DBs
Position
14:3198284..3200534
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AA seq
152 aa
AA seq
DB search
MAAMEEDNGEFYLRYYVGHRGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTP
AVLKECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVHSSQ
DPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI
NT seq
459 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgatggaggaagataacggagagttctatcttcgttactacgttggtcacaga
ggtaaattcggtcacgaattcttggaattcgagttccggcctgatggaaaactccgatac
gcaaacaactctaattacaaaaacgacaccatgattcgtaaagaagtctttcttaccccc
gccgttctcaaagagtgccgccgcatcatctccgagagcgagattatgaaggaagatgac
aacaactggccagagccggaccgggttgggaggcaagagctggagattgtgatggggaat
gagcatatttcatttactacgtctaagattggatcacttgttgatgttcacagtagccag
gatcctgaagggcttcgcatcttctattatcttgttcaggacttgaagtgctttgttttc
tctctcatctccctccacttcaaaatcaagcccatataa
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