Populus trichocarpa (black cottonwood): 18105083
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Entry
18105083 CDS
T01077
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
18105083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
18105083
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
18105083
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
18105083
NCBI-ProteinID:
XP_024441564
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All DBs
Position
14:complement(3237883..3244109)
Genome browser
AA seq
1210 aa
AA seq
DB search
MMDYTLPISKRTRLREAEVYKKLHDEIRKGRNQGKESNAAATGSTNGLNGAQEESVGGLS
YKGSKSPVVLDDSEDDAFLDDCEKGGLEEGLDVVSLDDSDDDDQSEGVESKSFDVGGKKS
GGTDVGGSCSGVKSDGEESGRSKVPLPRWQRIVNESYNGDVFAHERNEGGVCFLSSGIGN
GSGGVGLKGRESNGVAGRTELRSGFCEKKKDGNVVVVVDDDDDDACIILEKDAEELQSSS
SGEEETFKDDSDDDDYRVELPESFMVEEEEKEEDGDREQGEMELKRNKVYGIEVLCDSDI
GKFENNDVDMDDSLCVAKRTRSHYNLESAKKRMKLETVSRPLCVDEEKLDDNGDNDEDDT
EAYEAVDVAQKVRSKKGKTKPTGGNGGDVDDGDETCDHKSQRRTIESREGSRDEHGHGVC
RRKPSKRRRKEYEVVKILANSLFLDLEDVPFKEEREPLEEPVLPLKFTFGIEESSPPVKS
EEEKQLEELWADMALALCLKDTTDDAALDENEDDAHEVEPDTVTLCHQGNHELYLDEEIG
LLCKYCSFVDLEIKYYVPPFDRYPRGKSARRDFVTMQHNIFNDLHHQDSGHDTHPDYDPC
TLVQGTVWNLIPGIGKGMHGHQREGFEFLWKNIAGGIYLDKLKENANLNGGTGCIISHAP
GTGKTRLTIVFLQTYMQLYPTSRPVIVAPCSMLLTWEAEFLKWGVDIPFHIMNKKNLSGK
ENRTAMDLFRELKPAERGLNAIRMVKLYSWKKERSILGISYRLFEELVGEEKSKTKVSDK
TEDDQVRKVLLELPGLLVLDEGHTPRNDRSRIWKALSKVQTQKRIILSGTPFQNNFDELY
NTLCLVKPKFADEISSKHHRAFPKRRRCKRNTDARRNWASLTTAIGKVTDDKLEAQRVEE
LRKMIWQFVHVHKGGVLRERLPGLRDSVVILQPVHLQKTLLENVKQINGLDHFEMEYLLS
VLSVHPSLLPEKSVGTLEFKFVDRMELEMLRSKPEAGVKTKFLMELIRLCQARNEKVLVF
SQYLEPLNLVIKQLESNFSWIQGEDILYMHGKLKIDERQILIKHFNNANSNAKVLLASTR
ACSEGINLVGASRVVLLDVLWNPSVERQAISRAYRLGQEKVVYIYHLITSGTMEEEKYFC
QVEKERLSNLVFDCTNRSSNHQKGVFDIAEDKKDKILEEMVQHDKLKLMFKRIVYQPKDT
NIVKSFDLDL
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgatggactatacattgcctatatctaaaaggaccaggcttagagaagctgaagtgtat
aagaaattgcatgatgagattaggaaagggagaaaccaagggaaggaaagcaatgctgcc
gctaccgggtcaacgaatggacttaatggtgctcaagaggaaagcgttggcgggttgtct
tacaagggaagtaagagtccagttgtcttggatgatagtgaagacgatgcctttttggat
gactgtgaaaagggggggcttgaggaagggttggatgttgtttcccttgacgatagtgat
gatgatgatcagagtgagggagtagagagtaagagttttgacgttggtggtaagaagagt
gggggaacagatgtgggtggaagttgtagtggcgtgaaatctgatggagaggagagtggg
agatcaaaggttcctcttcctcgttggcagagaattgtgaacgagagttataatggtgat
gtttttgcgcatgagaggaatgagggtggcgtgtgttttttgtcgagtggaattgggaat
ggaagtggtggggtcggtttgaaggggagggagagtaatggggtagccggaaggactgag
ttgcggtccgggttttgtgaaaagaagaaggatggtaatgttgttgttgttgttgatgat
gatgatgatgatgcttgtattattttggaaaaggatgcagaggaattgcagagttcttct
agtggagaagaggaaacctttaaagatgattcagatgatgatgattatagagtggagtta
ccggagagttttatggttgaggaggaagagaaagaagaggatggtgatagggagcaaggt
gagatggaattgaagaggaacaaagtttatggaattgaagtgttatgcgactctgatatt
ggtaaatttgagaataatgatgtcgacatggatgattctctttgtgtggcaaaacgtacc
cgatcacactataatttggaatcggctaagaagagaatgaagcttgaaacagttagccga
ccactttgtgttgatgaggagaagttggatgataatggtgacaatgatgaagatgatact
gaagcctatgaagcagttgatgttgctcagaaagttcggtctaagaaaggaaaaactaaa
ccaacaggagggaatggtggtgacgttgatgatggtgatgagacttgtgatcataagtct
cagagaaggacaattgagtctagagaaggcagtagagatgagcatgggcatggtgtatgt
agaaggaagcctagtaaaagaaggcgaaaagaatatgaagttgtcaaaattcttgcaaat
tccctttttctggacctggaagatgtgcctttcaaagaagaaagggaaccactcgaggag
ccagttcttcctctgaagttcacatttggaattgaagagtcaagtcctccagttaaatca
gaagaggagaaacaattggaggaactttgggctgacatggccttagctctttgcttaaag
gacaccactgatgatgcagcgctggatgaaaatgaagatgacgcccatgaggttgaacct
gatacagtcaccctttgtcatcaggggaatcacgagctttatcttgatgaagaaattgga
cttctatgcaaatattgctcttttgtggatttggaaatcaaatactatgtgccccctttt
gatagatatcctagggggaaatcagctaggagagactttgtgacaatgcaacacaatatc
ttcaatgatctccatcaccaagattctggtcatgacacacatcctgattatgatccttgc
actcttgtgcaaggcacagtgtggaacttaattcctggtattggaaagggtatgcatgga
catcagcgtgaaggctttgagtttctgtggaaaaacatagctggaggtatttatcttgac
aagctgaaagagaatgctaacttaaatggtgggacaggatgcattatatcccatgctcct
gggactgggaaaacccgcctaaccatagtgtttctccagacatatatgcaattatatcca
acaagcaggcctgtaatagttgctccttgtagcatgctccttacatgggaagcagagttt
ttgaagtggggggttgacattccctttcacattatgaacaagaaaaatctttctggaaaa
gaaaataggacagctatggatcttttcagggaacttaaacctgcagagcgtggtttaaat
gccatccgtatggtgaaattatattcttggaaaaaggagaggagtatcctggggatcagt
tacagactttttgaagaacttgttggtgaagaaaagagtaaaaccaaagtatcagataag
actgaagatgaccaggtaaggaaagtccttcttgaacttcctggtcttttagtccttgat
gaaggacatacacctcgaaatgacaggagtcgtatctggaaagctttgtcgaaggtccaa
acacaaaaacggattatactctcaggaacacccttccaaaataactttgatgagctttat
aacacactgtgcttggtaaagcctaaatttgcagatgagatctcgtccaaacaccataga
gcttttcctaaaaggcgtcgttgcaagagaaatactgatgcgagaaggaattgggcctcc
ttgacaactgcgattggcaaagtcactgatgataaactggaagctcagagggtagaagag
cttagaaagatgatttggcaatttgtgcatgtacacaagggtggtgtgctacgagaaaga
ctccctggattgagggactctgtggttatcttacagccagtccatttgcagaagaccctt
cttgaaaatgtcaagcaaattaatggcctggatcattttgagatggaatatttgttgtct
gtgctttctgtacacccttctctgttgccagagaaatcagttggaaccctagagtttaag
tttgttgatcggatggagttagaaatgcttagatcaaaacctgaggctggagtcaaaaca
aaatttcttatggaactcattcggctttgccaggcgaggaatgagaaagttctggtgttc
agtcaatatcttgagccactgaacttggtaatcaagcagctggagtcaaatttcagttgg
atccaaggagaagatatattatatatgcatggaaagcttaaaatagatgaacgtcaaata
ttgattaagcattttaacaatgcaaatagtaacgcaaaagtgttgctcgcatcaactaga
gcttgttctgaagggataaatcttgttggtgcttcaagagtggttttgcttgatgttttg
tggaacccatcggtggaaaggcaagccatcagccgcgcctacaggctagggcaagagaaa
gttgtctatatttatcatctcattacttcaggaacaatggaagaggagaagtatttttgt
caagttgagaaggagcgattgtcaaacctagtgtttgattgcacaaacagaagtagcaat
catcaaaagggcgtgtttgatatcgctgaagacaaaaaggacaaaattctggaagaaatg
gttcagcatgacaaacttaaactcatgtttaaaagaatcgtataccaaccaaaagatact
aatatagtcaaatctttcgacttggatttgtaa
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integrated database retrieval system
