Populus trichocarpa (black cottonwood): 18105242
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Entry
18105242 CDS
T01077
Name
(RefSeq) UV-stimulated scaffold protein A homolog
KO
K23720
UV-stimulated scaffold protein A
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
18105242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
18105242
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
18105242
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
Motif
Other DBs
NCBI-GeneID:
18105242
NCBI-ProteinID:
XP_006375367
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Position
14:complement(6512617..6515188)
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AA seq
676 aa
AA seq
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MYEIREITGASFQNYVCLINYFAAGLMEMEEGGGKARALIEKATNSTAALVDPRLLKAIK
TVVRYSDSELRLAAQTLLDLMKRDHSQVRYLTLLIIDELFMRSKLFRTLVVENLDQLLSL
SVGFRRNHPLPAPPAVASILRSKAIEFLEKWNSSFGIHYRQIRLGFDYLKTTLRLQFPNV
QATAARVQQERREREMKTKEILVKKFEVLKENLVPLKEEIRETVDEIGECLEIVKNKEAN
VVLGALDDDEDFEEFRPLELRQLRLDSLKEGEKVCENSENKVVFDALRELYKLLVTKHLV
SVQEGISVLIRVEVADTRLRDSMLKEFIDIRNHLQSVKKKCVESGCALPDITKHEKEEEE
DFWEEGKVESTDPGSFSEPNKRNKNSAAPSTSGEVKNDPSECSTKKLKRDEFLCSEGGGT
DSSSLRSKLMTVAPVIEWGSFLETWGSNRDVLANHRGLELESHWGRVDHDAVIPAKKIAE
LNLHATLYKEDRVEIQPCRAPSGKGGLCQRRDLRVCPFHGPIIPRDDEGNPINQGTSTSD
LTLDLGTDLVEQLAEQAVKNVRDRDEEARKRKMDKQSQKRAKLAKIREHNEAVLRDAAVA
STSRSSVYGDNVEASSRDRLLARNKKDTLASMLRKKVTTKDRLSQRLLNTRASDAMTRQL
TLGEDANYREAFPNQW
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaaataagagagataactggagcgagttttcaaaattatgtttgcttgattaat
tacttcgctgcgggattaatggagatggaagagggtggaggaaaggcgagggcgttgata
gaaaaggccaccaattccacggcggcgctcgtcgacccccgcctcctcaaagccatcaaa
acggttgtccgatactctgactcggagctccgactcgccgcccaaaccctattggatctc
atgaaacgcgaccactctcaggttaggtatttgacgcttctaataattgatgagctattt
atgcgatcaaagctatttagaactctagttgttgagaatttagatcagttgttaagtttg
agcgtgggatttagaagaaaccatccccttcctgctccaccggcagttgcgtctattttg
cgttcgaaagcgattgaattcttggagaaatggaattcttcgtttggaattcattacaga
cagatcaggttaggttttgattaccttaaaaccacgctccggcttcagttcccgaatgtt
caggctactgcagctcgagttcagcaggagaggagggaaagggagatgaagacgaaagag
attctagttaagaagtttgaggttttgaaggagaatttagtgccgttgaaggaggaaatt
cgggaaacggttgatgagattggggagtgtttagagattgtgaagaataaagaggccaat
gttgtgcttggtgctctagatgatgatgaggattttgaagagtttcgtcctttggagttg
cgtcagctgcggcttgattcgttgaaagagggggagaaggtttgtgagaacagtgagaat
aaagtggtttttgatgcattgagggagctgtacaagcttttagtgaccaagcacttggtt
tcagtccaagaaggaatctctgttctaatcagggttgaagtggcagatacgagattaaga
gattctatgctcaaggagttcattgatatccgaaatcaccttcaatctgtgaaaaagaaa
tgtgttgaatcaggttgtgctcttccagacattacaaagcatgaaaaagaagaggaagaa
gatttttgggaggagggtaaagttgaatcaactgaccctgggagttttagtgaacccaat
aagcgaaacaaaaattctgctgcaccatcaacttctggagaggtgaaaaatgacccttct
gaatgcagtaccaagaagttgaaacgcgatgagtttctgtgttctgaaggtggtggaact
gattccagctcgcttcgaagcaagctgatgaccgtggctccagtgatagagtggggctct
tttttggaaacttggggttcaaacagggatgttttagccaaccacaggggcttggagctt
gaaagtcactggggtagggtggaccatgatgcagttattccagcaaagaaaattgctgaa
ttaaaccttcatgcaactctttacaaagaagacagagtcgaaatccagccatgtcgggct
ccatcagggaagggtgggctctgtcagagaagagatttgagagtttgcccctttcatgga
cccatcattccccgtgatgatgaaggaaatcctatcaatcagggcacttcaacaagcgat
ttaactcttgatttagggactgatttagtagagcaattagccgaacaagctgtgaagaat
gttcgggacagagatgaggaagcaaggaagagaaaaatggacaaacagtcacagaaacgt
gctaagcttgcaaagatacgggaacacaatgaagctgttctgagggatgctgcagtggct
tcaacttcaaggtcttcagtttatggggacaatgttgaggcatccagcagggacaggttg
ttggctagaaacaaaaaagataccctcgcatccatgttgcgcaagaaagtaaccacaaaa
gataggctgtctcagagacttttgaatacaagggcaagtgatgcaatgacaaggcagcta
acgctgggtgaagatgccaattatagagaagcctttccaaatcaatggtag
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integrated database retrieval system
