Populus trichocarpa (black cottonwood): 18105481
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Entry
18105481 CDS
T01077
Name
(RefSeq) serine/arginine-rich splicing factor SR34A isoform X3
KO
K12890
serine/arginine-rich splicing factor 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18105481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
18105481
Spliceosome [BR:
pop03041
]
Common components
Common spliceosomal components
SR proteins
18105481
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
Transformer
RRM_3
PRP38_assoc
PIM1
Motif
Other DBs
NCBI-GeneID:
18105481
NCBI-ProteinID:
XP_006374084
UniProt:
U5FPI8
LinkDB
All DBs
Position
15:280659..285352
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AA seq
260 aa
AA seq
DB search
MSGRFSRTIYVGNLPADIRESEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENARDAED
AIRGRDGYNFDGCRLRVELAHGGRGPSSNDRRGGYGGGGGSGGRFGISRHSEFRVIVRGL
PSSASWQDLKDHMRKAGDVCFAEVSRDSDGTFGVVDYTNHEDMKYAIRKLDDTEFRNPWA
RAYIRVKQHESSPSRSRSRSRSRSRSSRRNRSKSLERSVSRSRSRSRSKSRSASPLKSSR
PRSRSGSRSESPNKARSGSA
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtcgcttttctcgtacaatctatgttggcaatttgcctgcagatataagagaa
tcagaaattgaagatttattttacaagtatggccgtatcctggatgttgaattgaagatt
ccacctcgccccccttgttattgttttgtcgagtttgagaatgctcgggatgctgaagat
gcaataaggggtcgcgatggctataactttgatggttgtaggttaagggttgagcttgcc
catggtggtagaggaccatcatcaaatgatcgccgtggtgggtatggcggtggtggtggg
agtgggggtcggtttggcatctcacgccattctgaatttcgagttattgttcgtggtctt
ccttcttctgcttcctggcaagatttgaaggatcatatgcgaaaagctggagatgtgtgt
tttgctgaagtttctcgtgatagtgatgggacttttggcgttgttgattatacaaaccat
gaagacatgaaatatgctattcggaaacttgatgatactgagttcagaaatccttgggcc
agagcttatattcgggtgaagcagcatgagagctctccatcaaggagcaggagccggagc
cgtagcagaagtcgaagttcaaggagaaaccggagcaaatcattggaacgatctgtttca
aggtcaaggtcaaggtcaaggtcaaaatctagatcagcttcacctcttaaatcatccaga
ccaagatcaaggtccgggtccaggtcagaatctcccaacaaggcacggtctggaagtgcc
tga
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