Populus trichocarpa (black cottonwood): 18105512
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Entry
18105512 CDS
T01077
Name
(RefSeq) RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
18105512
Transcription machinery [BR:
pop03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
18105512
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
GerE
Motif
Other DBs
NCBI-GeneID:
18105512
NCBI-ProteinID:
XP_024442053
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Position
15:complement(1626521..1630292)
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AA seq
529 aa
AA seq
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MGIVSVSSSASWTPLGFSTKFSTCRSTAKRPLIVAFKADKSNETALVAPHEQIPLPIETT
KEKKRRGKSKKSSDRLKAVRTEVSPCTLGVDYNEAAAKLENIYKLSPGTDTSDVEDVNGV
IRRCRQRKRKTSECEKEDDGRTSKIIVRNQAKKAKRLSLQKRIALRIKSDEKLVTSVGKR
KGRKNENEKIDELVREYSSSTDLASLDWKKMKIPPVLTSAEHAWLFKLMQPMKASLQVKE
HLQENSGREPTEGELAEATDMDVLQVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQDYA
NGPRYQDLCQAGVKGLMTAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLE
SIRSEIQKAKLELWFQLLRKPTGEEIIEKVGISIERYHEVMRASKPVLSLHSRHKTTQEE
LISGVADVNGGDDRRQSALLRLALDDVFQFFVRNKYLISENPLQLDSLKPKESLVVRQRF
GLDGKGDRTLGEIAGNLNISREMVRKHEAKALMKLKHPTRVDYLCRYVV
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgggaattgtaagtgtttcgagctcagcttcttggacaccactaggattcagcacgaaa
ttttcaacttgtagatctacggcaaagaggccattgattgtggcatttaaagcagacaaa
tccaacgaaacagctttggttgcaccccacgagcaaatcccattgcccatagaaacaaca
aaggagaagaagagacgtggtaaaagcaaaaaatcttcggatcgattaaaagctgtccgt
actgaagtttctccgtgcaccttgggagtggattacaatgaagctgctgcgaaacttgaa
aacatatacaagcttagccctggaactgacacttctgatgtggaagatgtaaatggtgtg
attaggagatgtaggcaacggaaaaggaagactagtgaatgtgaaaaggaagatgacggt
agaactagcaaaataatcgtaaggaaccaggcaaagaaggctaaacgattgagtcttcag
aaaagaattgcactgaggatcaagagtgatgaaaaattggtgacttcagttgggaagaga
aaaggtcgaaagaatgaaaatgaaaagattgatgaacttgtgagggagtattcttcttca
actgatttggccagcttggactggaaaaaaatgaagatccccccagtccttacttcagca
gagcatgcctggttatttaagttgatgcagcctatgaaagcatcccttcaagtgaaagag
catttgcaagaaaattcggggagagaaccaactgagggtgaattagctgaggcaacagat
atggatgtgctccaagtgagaaaacaaatagaggttggtcgagctgcaaggaacaaactt
attaagcacaatctccggcttgtattgtttgtgatcaacaaatattttcaagactatgca
aatgggccaagatatcaagatctttgtcaggcaggagtgaagggacttatgacagcaatt
gatcgcttcgaacccaaaaggagattccggctctccacttatgggctgttttggattaga
catgccatcataaggtccatgacactctcaagctttacacgtgtttcgttcggcctggaa
tcgataagatcagaaatccagaaagcaaaacttgaattgtggtttcaactgctaaggaaa
ccaacgggggaagagattattgaaaaagtagggatctccatcgagaggtaccatgaagtg
atgagggcctcaaaacctgttttgtctctccattcgagacacaaaacaacgcaagaagag
ttgattagtggagttgctgatgtcaatggaggtgatgaccggaggcaatcagctcttctc
aggcttgctcttgatgatgtgtttcaattctttgtcagaaacaaatatctaatctctgaa
aaccctctccagctagattcattaaaaccaaaggagagcctggtggtccgtcagagattc
ggactggatggtaaaggggatagaacattaggagagattgctgggaacttaaatatctca
agagaaatggtccggaagcacgaagctaaagcactcatgaagctcaagcatccaacgaga
gtggattatctttgccgctatgttgtctga
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