Populus trichocarpa (black cottonwood): 18105526
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Entry
18105526 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18105526 isoform X1
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
18105526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
18105526
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
18105526
Prokaryotic type
Archaeal type
TFE
18105526
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
Sgf11
Cas12f1-like_TNB
Zn_ribbon_8
ADK_lid
zf-C2HC_2
ANT
A24_N_bact
Motif
Other DBs
NCBI-GeneID:
18105526
NCBI-ProteinID:
XP_006374149
UniProt:
B9N8Y4
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All DBs
Position
15:5614298..5622252
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AA seq
472 aa
AA seq
DB search
MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRRQWVREEDLAK
ELKLHSKQLRRTLRFFEEEKLVTRDHRKETAKAAKMHNAAVANTTDGHRTKEGDDKIKMH
THSYCCLDYAQIYDVVRYRLHRMRKKLKDELEDKNTVQEYTCPNCGRRYNALDALRLMSL
VDEYFHCENCDGELVAESDKLAAQEGGDGDDNARRRRREKLKDMLQKMEVQLKPLMAQLS
RVKDLPVPEFGSLQEWQIHASAAGRAANGDSSYNDPSRSSQGYGGTPMPFLGETKVEVSF
SGVEGKEDLKSETASTGLKVLPPWMIKQGMNLTKEQRGEVKQGSKMDDSSAAAEPPDDKK
ISIENDDKIKDEYVKAYYAALLQKQREAEESAEKQQELLQTSISNGFSKSSSDRQVGMKS
KREEDDEPDDDVEWEEAPIGGNTSEGFKVNDLNAEAPASGEDDEDDIDWEEG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcgagcctttcaataggcttgtgaagcttgcggctcgagcattttatgatgat
ataacaacaaaaggagacaatcaacccaaaacgggacggagtgataataggggcatcgct
gtagtagtgcttgacgctctcactagacgacaatgggtaagggaagaagatttggccaag
gagttgaaattacactcgaagcaacttcgtcggactctgcggtttttcgaggaagaaaaa
ctcgtgacccgggatcataggaaagagacggctaaggctgcgaagatgcataatgctgca
gtagctaacactactgatgggcatagaaccaaggagggagatgacaagatcaagatgcac
actcactcttattgctgtctagattatgcacagatatatgatgttgttaggtacagactg
caccgcatgaggaaaaagctgaaggacgagttggaagacaagaacactgttcaagagtac
acatgccccaactgtggaagaagatacaatgctttggatgctctgcgcttgatgtctcta
gttgacgagtacttccactgtgagaattgtgatggggagcttgtagctgagagtgacaag
ttagctgcccaagaaggtggagatggagatgacaatgctaggaggcggaggcgtgaaaaa
ttaaaagacatgcttcagaaaatggaggtacaacttaagccattaatggctcaacttagc
agggtgaaagatttacctgtccctgaatttgggagtcttcaagaatggcaaattcatgca
agtgctgctggccgtgctgcaaatggtgattctagttacaatgatccctccagatcttct
caagggtatggtggaacaccaatgccatttctgggagagacaaaggttgaagtttcgttt
tctggtgttgaaggcaaggaggatctcaaatctgaaactgcaagtaccggtctgaaagtt
ttaccaccatggatgatcaagcagggaatgaaccttacgaaagagcaacgtggagaggtc
aagcaggggtctaagatggatgacagttcagcagcagcagagcccccagatgacaaaaag
atttctattgagaatgatgacaagataaaggatgagtatgttaaagcttattatgctgct
ctgcttcagaaacaacgagaagcagaagaatctgctgagaaacaacaggaattgttacag
acatccatctccaatggtttttccaaatcatcttctgatcgtcaagtgggcatgaaatcc
aaacgcgaggaggatgatgagccagatgatgatgttgaatgggaagaggctccaattgga
ggcaacacaagtgaaggttttaaggttaatgacttgaatgctgaagctcctgcttctgga
gaggatgacgaagatgatatagactgggaagaaggttga
DBGET
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