Populus trichocarpa (black cottonwood): 18105574
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Entry
18105574 CDS
T01077
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
18105574
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pop04040
]
18105574
Ion channels [BR:
pop04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
18105574
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
DUF6525
DUF8356
Motif
Other DBs
NCBI-GeneID:
18105574
NCBI-ProteinID:
XP_006374215
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Position
15:2694999..2713052
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AA seq
781 aa
AA seq
DB search
MANHDKDNIPTLSDTHPKSVDENVDSRFRPFLSRTQSASTSIPLDSMESYGSETNIVGFT
GPLRSARKAPLVQMSGPLYINRNTENLFLAKHGVTTRKKVDSKPEKYPSLNGRDKNDWDD
NYTATNAHLMRSGQLGMCNDPYCTTCPLYYHSTASQQRHAKTSSIFDSKFHSVLYGDAKG
WARRFNNAINSYIPGVMNPHTKVVQEWNKFFVLSCLGAIFIDPLFFILLSVKQEEKCIVI
NWGMTKAVVFLRCLTDAIFLLNILLQFRLAYVAPESRVVGAGELVDHPKKIAKHYLRGFF
FIDLFVVLPLPQITLFLLLLPKGLDSLGENYAKNILQAVILVQYIPRLLRFIPLLIGPNG
FIFETALANFFINLFTFLLSGHIIGLCWYLFGLQRLIHCLHHACRNSSYKNDCMKWIDSG
GHKKHGSDTSWDSWKENANASACFTLDGFSYGIYAHAVNLTGENTIIRYTYSLVWGIQQI
STLAGNQTPSYNSEEILFTMAIIGIGLLLFAFLIGNMQNFLQALGRRRAEMSLRRRDVDK
WMRHRRLPVELRRRVVEAGRYHWAATRGVNEEMLLENLPEDLQRDIRRHLFKFVKKVWIF
RLMDEHVLDAVCEKLKQKIYIKGSEVFCVGGLVEKMVFIVRGKLESIGHDGTVVALSEGN
VCGEELFTWFLEHSSVSKDGRKIKISGQRLISSRTVRCLTNVEAFSLSAADLEQVTSLFA
RNLRNPLVQGAIRYQSPYWRALAATHIQVAWRYRQKCLKHSKTSQSNHITSLSNHSSFSR
V
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggctaaccatgacaaagataatattccaacgctgtcagacacacatccaaagtcagtg
gatgaaaatgtggattctcgatttcggccatttctttccaggactcaaagtgcatcaact
tccattcctttggattccatggagtcctatggttctgaaaccaacatcgttggctttact
ggtccactgcgtagtgcaagaaaagctccactggtacagatgagtggtccattatatatc
aaccgcaacactgaaaacttgtttctggcaaaacatggtgtaacaactcgcaaaaaggtg
gattccaagccagaaaaatatccatctcttaatggaagggataagaatgactgggatgac
aactatactgctacaaatgcccatttaatgaggtctgggcaactaggcatgtgcaatgat
ccttactgcacaacatgcccattgtattaccattctacagcttcacagcaaagacatgca
aaaacttctagtatatttgattccaagtttcatagtgttctctatggagatgctaaaggc
tgggcaaggagattcaataatgctataaactcatatattcctggagttatgaatcctcat
actaaagttgttcaggagtggaacaaattttttgtcctttcttgcttgggggcaattttt
attgaccccttgtttttcatcttgctgtcggtgaaacaggaagaaaagtgcatagttatt
aattggggaatgactaaagcagttgtgtttttaaggtgcttgactgatgccatcttctta
ctgaacatacttcttcagtttaggttagcttatgtagctcctgaatctagagtggttggt
gctggagagttagttgaccatccaaagaaaattgccaagcactatctccgaggatttttt
tttattgacttatttgtggtattaccacttccacagatcactttgtttttactactccta
ccaaaaggattggattccttaggagaaaactatgccaagaatattttacaggcagtgatt
cttgtccagtacattccaaggttgttgaggtttattcctcttctcattggtccaaatggc
ttcatatttgagacggctttggcaaacttctttataaatcttttcacctttttgttgtct
ggccatatcattggattgtgttggtatctctttggcttgcagaggttaattcattgtctt
catcatgcctgccgtaattctagttataaaaatgactgcatgaagtggatagatagtggt
ggacacaagaaacatgggtctgatacaagctgggatagctggaaagaaaatgccaatgcc
agtgcttgttttacgttggatggtttttcttatggaatctatgcccatgcagtcaatctc
actggggagaataccatcatcagatacacatattcattagtttggggaatccagcaaatt
agcactcttgctggaaaccaaacaccgagttataactctgaggaaatcctctttaccatg
gcgataattggaatcggccttttgctctttgcttttctcataggaaatatgcagaacttt
cttcaggctctcggtaggaggagggcagaaatgtcactaaggcgacgtgatgttgataag
tggatgagacatcgacgcttgccggtagaactaagaaggagagtggtagaagctggacgg
taccattgggctgctactagaggtgtaaatgaagaaatgcttctggagaatttgcctgaa
gacctccagagggatataagaagacacctcttcaaatttgtcaagaaagtatggattttt
cgcctgatggatgaacatgtcttagatgctgtttgtgagaaattgaaacagaaaatatac
attaagggaagtgaagttttttgtgttggtggtctggttgagaagatggtttttattgtg
cgtggaaaattggaaagcatcggacatgatgggacggtggtagccttatctgaagggaat
gtttgtggtgaggaacttttcacatggtttcttgagcatagttcagtgtccaaagatgga
aggaaaatcaagatttctggacagcgtttgattagcagcaggacagtaagatgcttaaca
aatgtagaagcattttcactcagtgccgcagaccttgaacaagtcaccagcctttttgca
agaaacctgcggaatccgctcgtccaaggagccataaggtatcaatctccctactggaga
gcccttgctgctacccacattcaagttgcctggagatatcggcagaagtgtctgaagcat
agcaagacctctcaatcaaatcatattacctctctctcgaatcattcttctttctcgagg
gtttag
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