Populus trichocarpa (black cottonwood): 18105734
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Entry
18105734 CDS
T01077
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
18105734
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
18105734
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
18105734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
18105734
NCBI-ProteinID:
XP_024442667
LinkDB
All DBs
Position
15:7842402..7879226
Genome browser
AA seq
2096 aa
AA seq
DB search
MLIQLPRLTSSLRSPFDIDQAYLQRKVLLQNYLKKPNNTANSLHESELARKIIDGWEEAS
TEVRQAYRQFIGGVVELIDGEVQSEEFREVALNAYRIFGEEESADSNFTQKKSKLQKLIG
HAVSDARLQKVAALSQRLYGLQPRNSGAALIVESHVNGSGDDLEFGADLAFQAPARFLVD
TSLEDGELLGEESAAPLSMFHDGWYDHGDPGQNHSTTDGGNFDLSWLRDACDQIVGESTS
QLSQDDLPMAICRVLDSDKPGEEIAGDLLDLVGDSAFEIVQDLILHRKELVDAIHRGLSL
LKSDKTASNSQSRMPSYGTQVTIQTESAKQIDKLRRKEEKRNRRGTEHGVESDVAVASFS
SLLQASERKNPFDNLIGSGPGPHSLSVTALPQGTVRKHYKGYEEVIIPPTPTTEMKPGEK
LIEIKELDDFAQAAFHGYKSLNRIQSWIFQTVYYTNENILVCAPTGAGKTNIAMISVLHE
IGQHFKDGYLHKDEFKIVYVAPMKALAAEVTSTFSHRLSPLNMTVRELTGDMQLSKSELE
ETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVES
TQTMIRIVGLSATLPNYLEVAQFLRVSPETGLFFFDSSYRPVPLAQQYIGISEQNFAARK
DLLNEICYKKVVDSLKQGHQAMVFVHSRKDTAKTAEKLVELARNNEDVELFRNDEHPQFA
LFKKEVMKSRNKDLVELFGSGVGVHHAGMLRADRGLTERLFSGGLLKVLVCTATLAWGVN
LPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAYYL
RLLTCQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRQNPLAYGIGW
DEVIEDPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVET
YNELLRRHMNDSEVIDMVAHSSEFENIVVREEEQNELEMLLRSSCPLEVRGGPSNKHGKI
SILIQLYISRGSIDTFSLVSDASYISASLARIMRALFEICLRRGWSEMSLFMLEYCKAVD
RQIWPHQHPLRQFDKDLSAEILRKLEERGSDLDHLQEMEEKDIGTLIRYAPGGRLVKQYL
GYFPRIQLSATVSPITRTVLKLDLLIIPEFIWKDRFHGAAQRWWILVEDSENDHIYHSEL
LTLTKRMIRGEPHKLSFTVPIFEPHPPQYYIRAVSDSWLHAESFYTISFHNLALPEARTS
HTELLDLKPLPVTSLGNNTYEALYSFSHFNPIQTQIFHILYHSDNNVLLGAPTGSGKTIA
AELAMLRLFSTQPDMKVIYIAPLKAIVRERMNDWRKHLVSQLGKQMVEMTGDYTPDLMAL
LSADIIISTPEKWDGISRNWHSRSYVTKVGLVILDEIHLLGADRGPILEVIVSRMRYISS
QTERAVRFVGLSTALANASDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKYYCPRM
NSMNKPAYAAICTHSPTKPVIIFVSSRRQTRLTALDLIQFAASDEHPRQFLSMTEEVLQM
VLSQVTDQNLRHTLQFGIGLHHAGLNERDRSLVEELFANNKIQVLVCTSTLAWGVNLPAH
LVIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLY
EPFPVESSLREQLHEHINAEIVTGTICHKEDAMHYLTWTYLFRRLMVNPAYYGLENAEAE
TLNSYLSRLVQTTFEDLEDSGCIKMDEENVESMVLGTIASQYYLSYMTVSMFGSNIGPDT
SLEMFLHILSGASEYDELPVRHNEENYNEALSGRVRYMVDKNGLDDPHVKANLLFQAHFS
QLELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSASVNCMHLLQMVMQGLWFDKDS
SLWMLPCMNEDLQQSLRKRGISTVQQLLDLPGATLQAMIGNFPASRFYQDLQNFPCIRMK
LRVEKKDIDGRKSLALKIKLEKTNRKQNRSRAFTPRFPKLKDEAWWLVLGNTSTSELYAL
KRVSFTDHLVTHMELPSTLTSVQGMKLMLVSDCYVGFEQEHSVEELIKSQQTEAGD
NT seq
6291 nt
NT seq
+upstream
nt +downstream
nt
atgttgattcaacttcctcggctgacaagctctctcagaagcccattcgacatcgaccaa
gcctatctccagagaaaagtcctccttcaaaactacctcaagaagcctaacaatactgca
aactcgcttcatgaatcagaactcgcgaggaagatcattgatggatgggaagaagcctca
accgaagtgcgacaagcgtacaggcaatttattggaggagttgtggagttgatagatgga
gaggtgcaatcagaggagttccgcgaggtggcattgaatgcgtaccgcatatttggggaa
gaggagagtgccgatagcaactttacccaaaagaagtcgaaattgcagaaacttattggt
catgcagtttcagatgcgaggttgcagaaagttgccgctctatcacagaggctttatggt
ttgcaaccaagaaactctggagctgcacttattgtagaaagtcatgtcaatgggagtggg
gatgatctagagtttggtgctgaccttgctttccaagcgccagctaggtttctggtggat
actagtttggaggatggtgaactgttgggtgaggaaagtgctgctcctctttccatgttt
catgatggatggtatgatcatggtgacccgggacaaaatcattctactactgatggtgga
aatttcgatttaagttggttaagagatgcatgtgaccagatagttggagaaagtacttca
cagctttcccaagatgatcttccaatggctatatgccgtgtacttgattcagacaagccc
ggtgaggagatagccggtgatttattggatcttgtcggggatagtgctttcgaaattgta
caagacctcatactgcatcgcaaggaacttgttgatgctatccatcgtggattgtctcta
cttaaatcagataaaacggcctcaaactctcaatcacgcatgcctagttatggtactcag
gttaccatccaaacagaatctgcgaagcaaattgataaactccggcgcaaggaagaaaag
cgaaatagacgtggaacagaacatggggttgagagtgatgtggcagttgcaagtttttca
tctttacttcaagcaagtgagaggaaaaacccatttgacaatcttattgggtctggacca
ggaccccattcattgtcggtgactgctcttccgcaaggtactgtcaggaaacattacaag
gggtatgaggaagtcattattcccccaacaccaaccacagaaatgaaacctggagaaaag
ctgattgagataaaggagttggatgactttgctcaagctgcttttcatggctataaatct
ctaaaccggatacagagctggatatttcaaaccgtctattacactaacgagaatatactt
gtttgtgcaccgacaggagctggcaaaacaaacatagctatgatctctgttctacatgag
attggacagcacttcaaggatgggtacttgcacaaagatgaatttaagatagtttatgtt
gctcctatgaaggcgttagctgcagaggtcacatcaacatttagccatcgcttatctcca
ttgaacatgactgtgagagaacttactggggacatgcaactgtctaagagtgaacttgaa
gagactcagatgatagtgacaacacccgagaaatgggatgtcatcactcgtaagagcagt
gatatgtctctctcaatgctggtgaagctcttaattattgatgaagtacatcttttgaat
gatgatagaggccctgtgatagaggcactagttgccaggactctgcgacaggtggagtca
acacagacaatgatacgcattgttggactttcagccactctacccaattacctggaggtt
gctcaatttctcagagtgagtccagagacaggtctcttcttctttgattctagttatcgt
ccagtgcctcttgcccaacagtatattggaattagtgagcagaactttgcagctcgcaag
gacttgctgaatgaaatatgttataaaaaggttgttgattcattaaagcaaggtcatcaa
gcaatggtatttgttcattccaggaaggatacagcaaagacggctgagaaactggttgaa
cttgcacggaataatgaagatgtagagctctttagaaatgatgaacatccacaatttgcc
ttattcaagaaagaagtcatgaagtccagaaacaaagatcttgttgaactctttggaagt
ggggttggtgttcatcatgctgggatgctaagagctgaccgaggtctaaccgaacggctt
ttctctggtggacttttgaaggtacttgtttgcacagcaactttggcatggggtgtaaat
ctacctgctcacactgttgtgattaaggggacccagttatatgatccaaaggctggtggg
tggcgtgacctaggcatgcttgatgttatgcagatctttggaagggctgggagacctcag
tttgacaagagtggtgaaggcatcataatcacgtcccatgagaaactggcatactatcta
aggttgctgacatgtcaacttcctatagaaagtcagtttattagctctttaaaagataat
ttaaatgctgaggtggcattgggtactgttaccaatgtcaaggaagcttgtgcatggctt
ggttacacatatctttttatcaggatgaggcagaatcctctggcatatggtatcgggtgg
gatgaggtcattgaagacccttcgttgagtttaaagcagagagctcttgtaacagatgct
gcacgtgcacttgacaaagctaaaatgatgcggtttgatgagaaaagtggcaatttttac
tgcacagagcttggtcgcattgcaagccacttttatatacaatattctagcgttgaaact
tacaatgaattattgaggcgccacatgaatgatagcgaggttattgacatggttgcccat
tcttctgaatttgagaatattgttgttcgagaagaggagcaaaatgagctggagatgttg
ttgcgttcatcatgccctttagaagttaggggtggtccttcaaacaagcatgggaaaatt
tcaattcttattcagttgtacatatctcgtggctcgattgataccttttcactggtttct
gatgcttcgtatatcagtgcaagcttggcccgtatcatgcgggcattgtttgagatttgt
ttgcgcagaggctggagtgagatgtctttattcatgttggaatactgcaaggctgtagat
cgccaaatctggcctcatcaacatccacttagacaatttgacaaggatctttcagcagaa
atattgcggaagctagaagaacgaggatctgacttagatcatctgcaagagatggaagaa
aaggatatcggaacacttattcgttatgctcctggaggaaggttggttaagcaatatttg
ggatacttcccaaggatccagttatcagcaactgttagtccaatcaccagaacagtattg
aagctggatttgctcataattccagaattcatatggaaagatcgtttccatggtgctgct
caacgttggtggattcttgttgaggattctgagaatgaccacatctatcattctgagctt
ttaactctgacaaagcggatgattcgtggggaacctcacaagctatccttcactgtgcca
atttttgaaccacatcccccacaatattacattcgtgctgtttctgattcttggttgcat
gctgaatctttctacactatatctttccataatctcgcgctaccagaggctcgtacttca
catacagaacttctagatttgaaaccgcttcctgtaacttcacttgggaacaacacttat
gaagccttgtacagcttttctcatttcaatcctatacaaacgcagatctttcatattctg
tatcactctgacaataatgttctgttaggagctcccactggaagtgggaaaacaatagct
gctgaacttgctatgcttcgcctctttagtacacagcctgacatgaaggttatttacata
gcacctctgaaggctattgttcgagaaagaatgaatgattggagaaagcatcttgtctct
cagcttgggaaacagatggttgaaatgactggagattatactcctgatttgatggctctc
ttgtcagctgatatcattatatccactcctgagaagtgggatggcatcagtcgtaattgg
catagtagaagctatgtaacgaaggttggacttgtgatcttagatgagattcatttactg
ggagctgatcgtggacctatccttgaggttattgtttctaggatgagatacatatcatca
caaacagagcgcgcggtgcgttttgtaggtctttcaactgctttggcaaatgcaagtgat
ttggctgattggttgggtgttggtgaaatcgggctcttcaatttcaagccaagtgtgaga
cctgtgcctcttgaagtgcatatccagggatatcctggaaagtattactgcccaaggatg
aatagcatgaataaacctgcctatgctgcaatatgcacccattcaccgacaaaaccagtt
atcatatttgtttcatctcgtcgccagacaaggctcactgctcttgaccttattcagttt
gcagcttcagatgaacatcctaggcagttcctcagtatgacagaagaagtgctgcagatg
gttctctctcaggtcactgatcagaacctcaggcacaccttacagtttgggattgggctg
caccatgcaggtctgaatgaaagagatagatctctggttgaggaactttttgcaaataac
aagatccaggtattggtatgtactagtacactggcatggggtgtaaatcttccagcccat
ctagttattatcaagggaacagaatattatgatggaaaagcaaagagatatgtagatttt
ccaatcacagatatcttgcaaatgatgggtcgtgctggccgtccacagtatgatcaacat
ggcaaagctgttattcttgttcatgaacccaaaaagagcttctataaaaagtttttgtac
gaaccgtttccagttgagagtagtctgagggagcaattgcacgaacacatcaatgcagag
atagtgactggcacaatttgccacaaagaggatgcaatgcattatcttacatggacttac
ttgttccgtagattgatggttaatccagcctactatgggttagagaatgcggaggctgaa
actctgaattcttatttgtctagattagtgcaaactacatttgaagacctggaagacagt
gggtgtataaagatggatgaggaaaatgttgagtccatggtgctgggtacgatagcatca
caatattaccttagctacatgactgtatcaatgtttgggtcaaacatagggccagataca
tctcttgaaatgtttttgcatatcctatccggtgcttcagaatatgatgaacttcctgtg
cggcataacgaggaaaattacaatgaagcattgtctggaagagttcgatatatggtggat
aagaatggcttggatgacccacatgtgaaagcaaatctattatttcaggcacacttttcc
cagttagagttaccaatcagtgactatgtaactgatttaaaatcagtgttggaccaaagt
attcgcatcatccaggccatgatagatatatgtgctaacagtggatggctttcagcctca
gttaattgcatgcatcttttgcaaatggtcatgcagggcttatggttcgataaggattct
tcgttgtggatgttgccatgcatgaatgaagatcttcagcaatcactaagaaaaagagga
atatctacagtgcaacaactattggatcttcccggggcaactttgcaggccatgattgga
aattttcctgcttcaagattttatcaggatctgcagaacttcccctgcattcgaatgaag
ttaagagttgagaaaaaggacattgatggcagaaaatctctcgctctgaaaataaaattg
gagaagaccaatcgcaagcaaaatagatcaagggctttcactccccgtttccctaagctg
aaagatgaagcatggtggctagttcttggaaacacatccacttctgaactatatgctttg
aagagagtttctttcacagatcacttggtgacccatatggagttgccatcaacattaact
tctgtccaggggatgaaattgatgctggtttcagattgttacgttggttttgagcaagaa
cattcagttgaagaacttatcaaatctcaacaaacagaagcaggtgattga
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integrated database retrieval system
