Populus trichocarpa (black cottonwood): 18105740
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Entry
18105740 CDS
T01077
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03420
Nucleotide excision repair
pop03430
Mismatch repair
pop03440
Homologous recombination
pop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
18105740
03420 Nucleotide excision repair
18105740
03430 Mismatch repair
18105740
03440 Homologous recombination
18105740
03460 Fanconi anemia pathway
18105740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
18105740
03032 DNA replication proteins [BR:
pop03032
]
18105740
03400 DNA repair and recombination proteins [BR:
pop03400
]
18105740
Transcription factors [BR:
pop03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
18105740
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
18105740
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
18105740
MMR (mismatch excision repair)
18105740
DSBR (double strand breaks repair)
HR (homologous recombination)
18105740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
SH3_Rv0428c
Motif
Other DBs
NCBI-GeneID:
18105740
NCBI-ProteinID:
XP_024442045
LinkDB
All DBs
Position
15:7969186..7972644
Genome browser
AA seq
631 aa
AA seq
DB search
MNAAIEKSVSPDGISKMLSIPKPDSFTHLPEIILQVTNLEPKGKSYGFDASDGKMKIKAI
FSSRLSSEILSGNIQNLCLIRVLDYTVNEIPSKSEKFLIITKCEVVSPALEKEIKEVVEQ
EESDMGMPLKKPKLENEVKSENIKEAKGLILKPKQEIVAKSAAQIVHEQHGNMAPAARMA
MTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYRNARGEGCVFNVELTDGDGTQIQATMF
NEAAKKFYDRFELGKVYYISKGTLRVANKQFKTVQNDYEMTLNENSEVEEASDEAACIPE
TKFKFVPIDQLGPYVNSKDLVDVIGIVQSVSPTTSIRRKSNNETVPKRDIVVADETKKTV
VVSLWNELATSVGQELHDIADKSPVVAIKSLKVGDFQGISLSTLGKSIVQVNPVIAESEK
LRNWYDSEGKETSMASVGSGLSPSTKSGARSMYSDRVSLSHITSNPSLGEDKPAFFSIRA
YISFIKPDQTMWYRACKTCNKKVTDALGGGYWCEGCQKNDAECSLRYIMVVKVSDGSGEG
WVSAFNEEAEKIIGCSADELDLLKSQIEENTYQQRLKEATWNPHLLRISVSQNEYNNEKR
QRMTVRAVAPVDFAAESRFLLEEISKMKGSQ
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcagcgatagaaaaatcagtgagcccagatggaatatcaaaaatgctttcaatt
cctaaaccagattcatttactcatcttcctgaaatcatccttcaagtcacgaatcttgag
cctaaaggcaaatcttatgggtttgatgctagtgatggaaagatgaagatcaaagcgatc
ttcagttcacgtttgtcatctgagatcctctctgggaatattcaaaatctttgtctcatc
cgagttcttgattatacagtcaatgagatccccagtaaatctgagaagtttttgatcata
acaaagtgtgaggttgtttcacctgcgcttgagaaggagatcaaggaagtggtcgaacag
gaagaatcagacatgggtatgccgttgaagaagccaaagctagaaaatgaagtaaagagt
gaaaatatcaaggaagcgaaggggcttattttgaagccaaagcaagagattgttgctaaa
tctgctgctcaaattgtacacgaacagcacggaaatatggccccggctgcgcgaatggcc
atgacacggagagttcaccctcttgtttcattaaatccttaccaaggcaactggaccata
aaagtcagggttacaagcaaaggaaatatgcgtacctataggaacgcgagaggagaaggg
tgtgttttcaatgtggaattaacagatggagatggcactcaaatacaagcaacaatgttc
aatgaggctgcaaagaaattctatgataggtttgagctggggaaggtttactacatatcg
aaagggacgctcagggttgctaacaagcagtttaagacagtgcaaaatgattatgagatg
accttgaatgaaaactctgaagtggaagaggctagcgatgaagcagcttgtattcccgaa
actaaattcaagtttgtcccaattgatcagttgggtccctatgtcaattcaaaagatctt
gttgatgttattggaattgttcaaagtgtttcaccgacaacgagtatccggaggaagagc
aacaatgagactgttccaaagcgtgatattgttgtagctgatgagacgaagaagacagtt
gtggtgtcattgtggaatgagcttgcaacaagtgtgggacaggaattgcacgatattgct
gataaatctcctgtagttgcgatcaaatcccttaaagttggagattttcaaggtatatct
ttgtccaccctgggcaagagcatagtgcaagtcaacccagttattgctgaatcagagaag
ctgagaaactggtatgattctgaaggtaaagagacttcaatggcctctgttggctctggt
ttgagcccttcgaccaagagtggggcaaggtccatgtactctgatcgagtatctctatct
catataacaagcaacccatccttgggggaggacaagcctgcatttttcagcattagagca
tatataagcttcatcaaacctgaccagacaatgtggtatcgggcttgcaagacatgcaat
aagaaagtgactgatgctctggggggtggatattggtgtgaaggatgccagaagaatgat
gcagagtgcagcttaaggtacattatggtggtaaaagtttctgatgggagtggtgaaggt
tgggtttctgcattcaatgaagaagctgaaaagatcattggttgctctgctgatgaactt
gacctactcaaatcacagatagaagagaacacctaccaacaaagattgaaagaagccact
tggaatcctcatcttttgagaatcagtgtctcccagaacgagtacaataacgagaagagg
caaaggatgacagttagggctgttgctccagttgattttgctgctgagtccagatttttg
cttgaagagatttcaaagatgaaaggttctcaatag
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