Populus trichocarpa (black cottonwood): 18105879
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Entry
18105879 CDS
T01077
Name
(RefSeq) ubiquitin-40S ribosomal protein S27a
KO
K02977
ubiquitin-small subunit ribosomal protein S27Ae
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03010
Ribosome
pop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
18105879
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
18105879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
pop03011
]
18105879
04121 Ubiquitin system [BR:
pop04121
]
18105879
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
18105879
Ribosome [BR:
pop03011
]
Ribosomal proteins
Eukaryotes
Small subunit
18105879
Archaea
18105879
Ubiquitin system [BR:
pop04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
18105879
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
18105879
Exosomal proteins of colorectal cancer cells
18105879
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ubiquitin
Ribosomal_S27
Rad60-SLD
Ubiquitin_2
Rad60-SLD_2
Plexin_RBD
Dsc3_N
DUF2604
UBL_UBAC1
TBK1_ULD
OTU1_UBXL
Fer2_3
Ubiquitin_5
Motif
Other DBs
NCBI-GeneID:
18105879
NCBI-ProteinID:
XP_006374591
UniProt:
A9P863
U5FMJ8
LinkDB
All DBs
Position
15:complement(12812456..12813184)
Genome browser
AA seq
156 aa
AA seq
DB search
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE
CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD
NT seq
471 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcttcgtgaaaaccttgacgggcaagacaataaccctcgaggttgagtcctca
gacactattgacaatgtcaaagccaagattcaagacaaggaaggtatcccaccggaccaa
cagcgtctcattttcgctggaaaacagctcgaggacggccgtacacttgctgactacaac
atccagaaagagtccactctccacttggtgcttcgcttgaggggtggagccaagaagaga
aagaagaagacctacacgaagcccaagaagatcaagcacaagaagaagaaggtcaagctc
gctgtactccagttctataaggttgatgatagcggcaaggtccagaggttgaggaaggag
tgtcctaatgctgagtgtggtgctggtactttcatggctaatcattttgataggcactac
tgtggtaagtgtggccttacctatgtttaccagaaggctggtggtgattaa
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integrated database retrieval system
