Populus trichocarpa (black cottonwood): 18105973
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Entry
18105973 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: protein argonaute 2-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18105973
03036 Chromosome and associated proteins [BR:
pop03036
]
18105973
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
18105973
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
18105973
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
18105973
microRNA pathway
RISC loading complex
18105973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
PAZ
ArgoN
ArgoL1
ArgoMid
ArgoL2
Motif
Other DBs
NCBI-GeneID:
18105973
NCBI-ProteinID:
XP_024441911
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All DBs
Position
15:complement(13174699..13181011)
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AA seq
1041 aa
AA seq
DB search
MERAGYRGGGRGGHDGRYGGGRGGYGGGGRDGGRSGGYDGGRASGYGGGGRAGGYDGTGR
AGGYDGAGRAGGPRQHWRPNNQGSGGGPPPGQSVGGPGGTRGGGSHSERHGGAPTSQSGE
MGPRRGWEVRGGSEEGRSDQVSETGGGKGPSRPVNVSPSSNWASGSSSSGDLEPSPNVPK
GLASVTANRISPVLRPDKGGKLAVRTPRLLVNHFLVKFNPKSIIRHYDVNIKQEVLPKHG
RPGKISKSNLAMIRDKLFADDPSSFPRAMTAYDGEKNIFSAVSLPTGTFKVQVSEAEDAK
PRSYLFTIKLVNELELHKLKDYLDGKLRSTPRDILQGMDVVVKEHPARTMISVSRSFHSV
RDHQIHLGHGIIASRGCQHSLKPTSQGIALCLDYSVLSFHEPLSVIEFLTKHISGFNLNN
FRSFRRAVEGVLKGLKVRVTHRVTKQKYVITGLTRDDAQYITFPQEDPDGKASQNVRLVE
YFRQKYHRDIVHQDIPCLEMKSKMKNYVPMEFCVLVEGQVFPKEYLKETEAKMLKKFSLA
NPKDRQKTICRMVQDGDGPCSGEIIRNFGIEVSKNMTSLIGRVIGGPPELKVGALDGRVI
KIPVDKEKCQWNLVGKGVVEGKPIEXWAVLDFSSDDYQDRLNPRRFIPKLIARCQSLGIR
MEEPLFYQPTSMRKFSNVDVLREQLETVNERAHKSCGGQLQFLLCVMSRKDPGYKYLKWI
SETKVGIVTQCCLSTPANEGKDQYLANLGLKINAKLGGSNAELSGRLPYFGNENRVMFIG
ADVNHPGAQNKTSPSIAAVVGTINWPAANRYAARVRPQYHRKEQILNFGDMCLELVECYS
RLNKAKPEKIVIFRDGVSEGQFDMVLNEELTDIMKAFKSINYTPTITLIVAQKRHQTRLF
PGDEGSTGNVSPGTVVDTTIVHPFEYDFYLCSHYGSLGTSKPTHYYVLWDEHGLSSDDLQ
RLIYNLCFTFARCTKPVSLVPPVYYADLVAYRGRLYHEAVMEGQSPSSSSSRTSSSLSTA
ASLEERFFTLHADLENIMFFV
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggagagagcaggctatcgaggcggaggaagaggtggtcatgatggtaggtacggtggt
ggtagaggaggttatggagggggaggaagagatggtggtcgtagtggcgggtatgatggt
ggtcgtgctagcgggtatggtggcggtggtcgagctggcgggtatgatggtactggtcgt
gctggcgggtatgacggtgctggtcgtgctggcggtccacgtcagcattggaggccaaac
aatcaaggtagcggtggtggtcctccacccggtcaaagtgttggtggaccggggggcaca
aggggtggtggatcacattcagagcggcatggaggtgctccaaccagtcaaagtggtgaa
atggggcctagaaggggctgggaagtccgtggtggtagtgaagaaggaaggagtgaccag
gtgtcagaaactgggggaggaaagggaccttcaagacctgttaatgtgagtccatctagc
aattgggcttctggttctagttcttctggtgatcttgaacctagtcctaatgtgccaaaa
ggattggcttctgtcactgctaataggattagtccagttctacgaccagataaaggtggc
aaactggctgtccgaactcctagacttcttgtaaatcattttcttgtcaagttcaatcct
aagagcatcatacggcattatgatgttaatatcaagcaagaagtgcttccaaagcatggc
aggcctgggaaaatttcaaagtccaatttagcaatgatcagggataagttatttgctgat
gatccttcttcgtttcctcgtgctatgactgcttatgacggggagaagaacattttcagt
gcagtttccttgcccactggaacatttaaagtgcaggtctctgaggcagaagatgccaaa
ccacgttcttacctgtttaccataaagcttgtgaatgaacttgagctgcacaagctgaag
gattacttggacgggaaacttcgctcaacacctcgtgacatattgcaagggatggatgtc
gtggtgaaggagcacccagctaggacaatgatctctgtttcccgtagcttccattctgtt
agagatcatcaaattcaccttgggcatggaatcatagcatctagagggtgccaacatagc
ctcaaaccgacctcccaaggcatagctttatgcttggactattctgttctgtcatttcat
gagccactttctgtgatagaattcttgacaaaacatatttctgggtttaatttaaataat
tttagaagctttaggagggctgtggaaggtgtgctgaagggactgaaagttagagtgact
caccgtgtcaccaaacaaaaatatgttattacagggttgacgagagatgacgctcaatat
attacatttcctcaagaagatccagatggcaaggcttcgcagaatgttaggcttgttgaa
tatttcaggcaaaaatatcacagagatatagtgcatcaagatatcccttgcctagagatg
aaaagcaagatgaagaactatgtaccaatggagttctgtgtcttggttgaggggcaagta
tttccaaaagagtatctgaaggaaactgaagccaagatgttgaagaaattctcactagca
aatccaaaggatagacagaaaacaatatgcaggatggtgcaggatggagatggaccttgt
agtggagagattatccgaaattttggtatcgaagtcagcaagaatatgacctcattgatt
ggtcgtgtgattggggggccacctgaattgaaggtaggtgccctcgatggcagggtgatt
aaaataccagttgacaaggagaagtgccaatggaatcttgttgggaaaggagtggttgaa
gggaaaccaattgagtgatgggctgttcttgacttcagctctgatgattatcaagaccga
ttaaatccgcgccgattcatccctaagctgattgctcgatgccagagtctggggattcgc
atggaggagcctctcttttatcaacctactagcatgcggaagttctctaatgttgatgtg
cttcgtgaacaacttgaaacagtcaatgaacgggctcacaaaagctgcggaggccagttg
caatttcttctctgtgtcatgtcaaggaaggatcctggttacaagtatctcaaatggatt
tctgaaaccaaagttggtattgtgacacaatgttgtttgtccactcctgcaaatgaagga
aaggatcagtaccttgctaatcttggtctcaagattaatgctaagcttggaggaagcaat
gcagagctcagtggcagactcccgtactttgggaatgaaaaccgtgtcatgtttattggg
gctgatgtcaatcatcctggtgctcaaaacaaaactagtccatccattgcagctgttgtt
ggtactataaattggccagctgcaaaccgctatgcagctcgagttcgtcctcagtatcat
cgtaaagagcagattctgaattttggtgatatgtgcttggagcttgttgaatgttattcc
cggctcaataaagcgaaacctgagaagattgtgatttttcgtgatggggtcagtgagggc
cagtttgatatggttcttaatgaagagttaacggacataatgaaggcattcaagtcaatc
aattacaccccaaccataacactcattgttgcccagaaacggcaccagactcgtcttttt
cctggggacgagggatctactggcaatgtgtctccaggcacagttgtggacacaacaatt
gttcatccttttgagtatgacttttacctctgtagccactacggaagtcttgggacaagc
aagcccacgcattattatgttctatgggatgagcatggcctcagttcggacgacttgcag
aggctcatatacaacttgtgcttcacatttgctcgttgcacaaaacctgtgtcattagtc
ccaccagtctactatgctgaccttgttgcttatagaggaaggctttaccatgaggcagta
atggaagggcagtctccatcttcatcatcttcaaggacttcatcatcactttcaactgca
gcttcgctggaagagaggttctttacgctgcatgcagacctggaaaacatcatgtttttt
gtttga
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