Populus trichocarpa (black cottonwood): 18105985
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Entry
18105985 CDS
T01077
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18105985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18105985
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18105985
mRNA degradation factors
5'-3' decay
Decapping complex
18105985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
WD40_Prp19
Beta-prop_HPS5
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_CAF1B_HIR1
COG2_C
Motif
Other DBs
NCBI-GeneID:
18105985
NCBI-ProteinID:
XP_006373560
LinkDB
All DBs
Position
16:complement(102083..111585)
Genome browser
AA seq
1567 aa
AA seq
DB search
MASPGNPNQQQQGGGGIIGGGGGFDLNKLFKPSSSNPMNMMQPHIQQQQQQQQGPPPSPN
SNTTTSGNLTTSPSFPLPSSSPPYLTPSSSYPPPTGPYHPFHHPHYLSPYPPPPPPQQLH
NQFLTNTNIHLQNRPQPISSFAPSPPPLSPNNSGGAVLMDILTNQNQQQPPQSTNLSGPF
PSSTPSTAFITTSPPVPSAPPVSLASPTQQCCAPPARMLSTKLPKGRHLNGNHVVYDIDV
RLQGEVQPQLEVTPITKYLSDPGLVLGRQIAVNRNYICYGLKPGAIRILNINTALRSLLR
GHNQKVTDMAFFAEDVHLLASACVDGRVFIRKINEGSDEEEKPQIFERILLALHIIADGE
SFHPRVCWHPHKQEILIVAIGNLILKIDTIKIGKGGAFSVEQPLTCPIDKLIDGVQLVGK
HDGEVTELSMCQWMTTRLASASTDGVVKIWEDRKAVPLAVFRPHDGNPVNSVAFLTAPDR
PDHIVLITGGPLNQEVKIWASASEEGWLLPSDAESWQCTQTLTLKSSAESSAEDAFFNQV
VALPRASLFLLANAKKNAIYAVHLEYGPYPAATQMDYIAEFTVTMPILSLTGTSDCLPNG
ENIVQVYCVQTQAIQQYALNLSQCLPPPLENMVLEKTESNVSRAFDTANSDGSAIMESSH
GSKPIEISTGNMTSIPPMTPSSSESAPVARESLGSSDVGSSLDIASSGGQTKAITISSRN
NTDNTNTVSPHLLLIPKLSRSLSGLQSPANITDPNVQLSGHAGDQPVSDHSVDRRIETVK
ENVTDTSTGDNLNKGEKNIEQTGIAMVSEPPVMFKHPTHLITPSEILSRGAASENSQTTQ
GLNVGEAKIQDVLVNNDTENVEVEVKVVEETPGSGTVPVSSSKEKPDRLTISKSTSSRLK
KKREEFLLKADLAGTTYLHGAYKGPEEKKENVISSEVTESTSPILKQTPADALQVDSVAS
EKNKGEPDDWEDAADMSILKLDGDGELSRGESGANQNNDFDLPIESHTPVAEKKEKPFYS
QASDLGIQMARDCHVEAYSVGAIRQANEGSITEVLDRNPSGVDEEQHITEDVRAKSGEAE
TSVAVLQSPAPAPATKGKKQKGKSSQVSVPSSPSPSPFNSTGSSNEPGCTSGAQSSDAAL
PQILALQDTLDQLLNMQKEMQKQMNTMISVPVSKEGKRLEASLGRSIEKIIRANTDALWA
RFQEENTKHEKLEKDRIQQLTNLITNCINKDLPTALEKTLKKEIAAIGPAVARAITPILE
KSISSAITESFQKGVGEKAVNQLEKTVSSKLEATVARQIQSQFQTSGKQALQDALRSTLE
ASIIPAFEMSCKAMFDQVDATFQNGLNKHINDIQQQFNSMHSPVAIALRDAINSASSLTQ
TLSGELADGQRQLLAMAAAGANSKVGDPSTKLGNGPLPGMHEMPEVPLDPTKELSRLIAE
QKYEEAFTLALHRSDVSIVSWLCSQVDLQGILSISPLPLSQGVLLALLQQLACDFSNETS
RKLAWMTDVAAAINPTDPMIAMHVGPIFDQVYQIVVHQRSLPSTSASEASGIRVLLVVIN
SVLRSCK
NT seq
4704 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacctggcaatccaaatcaacaacaacaaggaggtgggggaataataggggga
ggaggaggttttgatctgaataaactgttcaagccctcttcttcaaatcctatgaatatg
atgcagccccatatccaacaacaacagcagcagcagcaaggtcctcctccatctcccaat
agtaacactaccacaagtggcaatctcactacctctccttccttccctctcccttcctct
tctccaccttatctaactccatcttcttcttatccacctcctactggcccttaccaccct
tttcaccaccctcactatctctccccttacccgcctccacctcctcctcagcaacttcac
aatcagttcctcacaaatactaacatccatctccaaaatagaccacaacccatctcttcc
tttgcaccctctcctcctccactctcacctaataattcaggtggtgctgttttgatggac
atcttgaccaatcaaaaccaacagcagcctccgcaatccactaatcttagtggacctttc
ccttcttccactccctcaactgcattcatcaccaccagtcctcctgtcccatctgcccct
cctgttagtttagcatctccaacgcagcaatgctgtgctccccctgcgaggatgctcagt
accaagctccctaagggtcgacacttgaatggcaaccatgtcgtgtatgatattgatgtg
agattgcaaggtgaggtgcaacctcaacttgaagtcacacccatcaccaaatatttatcc
gatcctggccttgttctcggccgtcagattgctgttaatagaaattacatttgctatgga
ctcaagcctggtgctattcgtatcctcaatattaatactgctttgagatcattgcttcgg
ggacataaccagaaagtaacagacatggctttctttgctgaggatgttcaccttctggcc
agcgcatgtgttgatgggcgtgttttcataaggaagatcaatgagggctcagacgaggaa
gaaaaacctcaaatttttgaaaggatactccttgcccttcacataatagcagatggagaa
tcattccacccacgagtgtgctggcatccacacaagcaggaaattttgattgttgcaatt
ggaaatctcatcttgaaaattgataccattaagattggaaaaggtggagcattttcagtg
gagcaacctcttacttgtcccattgataagttgattgatggggtccagcttgttggtaaa
catgatggggaagtcactgagttgtccatgtgtcaatggatgaccacccgtttagcttca
gcttcaacagatggcgtggtcaagatttgggaagaccgtaaggcagtaccccttgcagta
ttcagaccacatgatggtaatcctgtaaattctgtggcattcctgaccgcccctgaccgc
cctgatcatattgttcttatcactggggggcccctcaatcaggaagtgaagatatgggcc
tccgctagtgaagagggctggttattgcctagtgatgctgaatcatggcagtgcactcag
accttgaccttaaagagttcggctgaatctagtgctgaggatgcattttttaatcaagtt
gtagccctaccccgagccagcctgtttcttcttgcaaatgccaagaagaatgccatatat
gctgtacacctagaatatgggccatatccagctgcaacccaaatggattacatagctgag
tttacagttacaatgcctattttgagtcttactggaaccagtgattgtttaccaaatgga
gaaaatattgttcaggtttactgtgtccaaacacaggctattcagcaatatgcattgaac
ttatcacaatgccttccaccacctctggagaacatggtgttggagaaaacagaatctaat
gtttctcgtgcttttgatactgctaattctgatggttctgctattatggaatcatctcat
ggaagtaaacccattgagatatccacaggtaacatgacttccataccaccaatgactcct
agcagttctgaaagtgctcctgtagcaagagaaagcttgggttcttctgatgttggtagc
tcgctagatattgcttcttccggtgggcaaaccaaggctattactatttcatcacgtaat
aatactgacaatactaacactgtgtcaccccatctactgttaattccaaagttgtctcgg
tcgttgtcaggactccagagtccagcaaatatcacagatcccaatgtgcaactcagtggt
catgctggtgaccagcctgtttcagatcattcagttgaccgaagaattgaaactgtgaaa
gaaaatgttactgatacctccactggtgataatttgaataagggtgagaagaacatcgaa
caaactggtattgcaatggtctctgaacctccagtaatgtttaaacacccaacccatctt
ataactccatcggagatattatccaggggtgctgcttctgagaattctcaaactactcag
ggtctgaatgttggagaggcaaagattcaggatgtgcttgtgaacaatgatactgaaaat
gttgaagtagaggttaaagttgttgaagaaacccccggcagtggaacagtcccagtatct
agttccaaagaaaaacctgataggctgactatatcaaagagtacctctagtagattgaag
aagaagagagaagaatttcttctgaaagcagatcttgctgggactacttatcttcatggg
gcatataaaggccccgaggaaaagaaagaaaatgtcatatcttcagaagtcacagaaagc
accagccctattctgaaacagacacctgctgatgccttgcaggttgactctgtagcaagc
gagaaaaataaaggcgagccagatgattgggaagatgctgctgacatgtctatactgaaa
ctggatggtgatggggaactatcacgtggagagtcaggagccaatcaaaataatgacttt
gacttgcccatagaatctcatacacctgttgctgagaagaaggaaaaacccttctactct
caggcctcggatcttggcattcagatggctagagattgtcatgtggaagcttatagtgtt
ggggcaatccgacaagctaatgaaggtagcattactgaggtacttgatagaaatcctagt
ggtgtagatgaggagcaacatataactgaagatgttcgtgcaaaaagtggtgaagcagaa
acatctgtggcagtcctgcagtccccagccccagccccagcaactaaaggaaaaaaacag
aaggggaaaagttctcaagtatctgttccatcttccccttccccgagtccattcaactca
actggttcgtccaatgaaccaggttgcacttctggtgcccaatctagtgatgctgcttta
cctcagatattggccttgcaggatactcttgatcagttactgaacatgcagaaagaaatg
cagaagcagatgaatacaatgatttctgtcccagtttccaaagaaggtaaaagactagag
gcatccttgggccggagcatcgagaaaattatcagggctaacacagatgctctatgggct
cgttttcaagaagaaaacacaaaacatgagaagttggagaaggaccgtatacagcagtta
actaatttgatcacgaattgtataaacaaggatttgccaacagctttggagaaaacttta
aagaaggaaatagctgcaatcggacctgctgttgctcgtgctatcactcccattttggag
aaaagcatatcatcagctattacagagtcattccagaaaggggtgggagagaaggcagtg
aatcagttagagaagacagttagttcaaaacttgaagctacagtggccagacaaatccaa
tcacagtttcaaacatctggcaagcaagctcttcaggatgcattaaggtctacgctggaa
gcttcaattattcctgcatttgagatgtcctgcaaggccatgtttgatcaagttgatgcc
acattccagaatgggcttaataagcatataaatgacattcagcaacagtttaattccatg
cattctcctgtggccattgccctgagggatgctatcaattcagcgtcatcactcacccag
accttaagtggagagctggcagatggtcaacggcagctcttagctatggcggctgcaggt
gcaaactcaaaggtgggagatccatcaacgaagttgggcaatggaccattgcctggtatg
catgagatgcctgaggtgcctttggatccaacaaaagaattgtcaaggttgatagctgag
cagaaatatgaggaagcgttcaccttagctctgcacagaagtgatgtctcaatagtttcc
tggttatgttctcaggttgatctacaggggatattgtcaatttcaccactacctttaagc
caaggagttctgctggcccttctacagcaactggcatgtgattttagtaatgaaacctct
agaaagttggcatggatgacagatgtggctgctgccataaaccctacagatccaatgatt
gcgatgcatgtaggaccaatttttgatcaagtctatcagatagtggtccatcaaaggagt
ctgcccagcacatctgcttcagaagcctcaggcatacgtgttcttctggttgtcataaat
tctgtgctaaggagctgtaaatga
DBGET
integrated database retrieval system
