Populus trichocarpa (black cottonwood): 18106064
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Entry
18106064 CDS
T01077
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18106064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18106064
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18106064
mRNA degradation factors
5'-3' decay
Decapping complex
18106064
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
18106064
NCBI-ProteinID:
XP_006373646
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Position
16:1072281..1079853
Genome browser
AA seq
788 aa
AA seq
DB search
MERSDGKDFKEFTESSSGALFDASQYEFFGQHAVEEVELGGLEDEGENLLLGPTNDEYRL
FDRDEGVCLGSLSEIDDLASTFAKLNRVVTGPRNPGVIGDRGSGSFSRESSSATDWAQDG
EFTSWLDQQMFNAENSQDSKRWSSQPQPSSACFSESKPLYRTSSYPQQPQQLQHFSSEPI
PVPKSNFTSFPPPGCSPHHLNVASRAGGLQSHLSAPNLSPLSNSNLHLAGLQHGLHYGGN
LAQITSPGLSFNNRPQKHWVNHAGLLHVDQSRLLQSILQQQLSHQNGLLSSQLMSPQQQL
QQQRLHPSVQPSLAHFAAMQSQLFNAHPSSLHIREQKHKSSQRNRRFSQGSDTSSQKSDG
GWVQFRSKHMTADEIESILKMQHAATHSNDPYIDDYYHQASLAKRSTGSRTKNNFCPSHL
KELPSRSRNSADQHSHLHFDALGKMPLPSIRRPHPLLEVDPPGSGDGNSEQMSERPLEQE
PMLAARITIEDSLSLLLDVDDIDRFLQCNQPQDGGAQLRRRRQNLLEGLAASLQLVDPLG
QTGKTAGLASKDDIVFLRLVSLPKGRKLICKFLQLLYPGSELTRVVCMAIFRHLRFLFGG
IPSDTGAADTTTNLTKTVSACVSGMDLHALSACLVAIVCSSEQPPFRPLGSPAGDGATVI
LKCLLERASKLLHGPQASANCGMPNFALWQASFDEFFDLLMKYCLIKYDTILQSVYAKTP
PSAEGIDSEVRAATKREMPVELLRACLPHTNERQMELLRHFGQQRNTITGLSAHPGNSGH
INSESVRS
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggagcgatctgatggcaaggatttcaaagaattcactgaatcttcttcaggtgcactc
tttgacgcttcacagtacgaattttttggtcaacatgctgtggaagaagtggagttgggt
ggtttagaagatgagggtgagaatcttttgctcgggcccaccaatgatgagtaccgtttg
tttgatagagatgaaggtgtatgtttaggatctttatctgaaattgatgatctggcaagt
acttttgctaagttgaaccgagttgtaactggacccaggaatccaggagttattggtgac
agaggatctggatccttttcgagggaaagctcatctgccactgattgggcacaagatgga
gagtttacgagttggttagatcaacaaatgtttaatgcagaaaattctcaggatagcaag
agatggtcatcacagccccaaccttcttctgcttgtttctcagaatcaaaacctttgtac
agaacttcctcatatccccagcagccacaacagcttcagcacttctcaagtgaaccaatt
cctgtacccaaatcaaatttcacatctttccctcctcctggttgttcgccacaccacctt
aatgttgcttctcgtgctggtggactgcagtcacacttgtctgccccgaatctgtctcct
ttgtcaaactctaatcttcatctggctggtttacagcatgggttacattatggtggaaat
ctggcccagatcacgtctcctggcctttcttttaataacaggccacaaaaacattgggtt
aatcatgctggcttattacatgtagatcagtctaggctcttacagagtatactgcaacaa
caattatcacatcaaaatggcctattgtcttcccaattaatgtcaccacagcagcaattg
caacagcagagactgcacccttcagttcaaccatctttggctcattttgcagcaatgcaa
tctcaactctttaatgcacatccttcatcattacatatcagggaacaaaaacataaatca
tcccaaagaaaccggcgcttttcacaaggctctgacactagtagtcagaaaagtgatggt
ggctgggtgcaattccgatccaagcatatgacagctgatgaaatcgagagtattctgaaa
atgcagcatgctgctactcatagcaatgacccatatatagacgattactaccaccaagct
tctcttgccaaaagatctactgggtcgagaactaaaaacaatttctgcccgtctcacttg
aaggagctaccttctcgatctcgtaacagtgcagaccagcattctcatctccattttgat
gctctcgggaagatgcccctcccttccatacggaggcctcatccccttcttgaagttgat
cctcctggttctggtgatggaaactctgaacaaatgtctgagaggcctttggaacaggaa
cctatgcttgcagctagaatcaccattgaagatagcctgtctcttcttcttgatgtagat
gatattgaccgtttcctgcagtgtaatcagccccaagatggtggggctcagctcaggcgt
aggcggcagaacttgcttgaaggattggcagcgtcacttcagcttgttgacccacttggc
caaactggcaaaactgctggacttgcctcaaaggatgacattgtgttcctgcggttagta
tcacttcccaagggtcgaaagctcatctgcaagtttcttcagcttctgtatcccgggagt
gaactcacccgtgttgtctgcatggctattttccgtcacttgaggtttttgtttggtggc
attccctcagatacgggagcagctgacacaactacaaatctcacaaagacagtttctgca
tgtgtaagtggcatggatcttcatgcattgagtgcttgccttgtagccatagtttgttct
tcagagcagccaccatttcggcctcttggtagccctgctggggatggagccacagttatt
ttgaagtgtcttcttgaaagagctagtaaactattacatggtccccaggcttctgccaac
tgtggtatgcccaattttgctctctggcaggcatcatttgatgaattttttgatcttctt
atgaagtactgcctgattaaatatgacactatactgcaatcagtctatgcaaagacacca
cctagcgcagaaggtattgattcagaggtgcgtgcagcaacaaaacgagaaatgcctgtt
gagcttttaagagcttgccttcctcatacgaatgaacgccagatggaacttttaagacat
tttgggcagcaacgcaataccattactggcctgagtgcacatccagggaatagtggtcac
ataaactctgaatcagtgaggagttga
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