Populus trichocarpa (black cottonwood): 18106297
Help
Entry
18106297 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18106297 isoform X1
KO
K13917
mRNA-capping enzyme [EC:
2.7.7.50
3.6.1.74
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18106297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18106297
Enzymes [BR:
pop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.50 mRNA guanylyltransferase
18106297
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.74 mRNA 5'-phosphatase
18106297
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Capping factors
18106297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
mRNA_cap_enzyme
mRNA_cap_C
DSPc
Tc-R-P
DNA_ligase_A_M
Y_phosphatase2
PTP-SAK
Y_phosphatase
PTP-NADK
Y_phosphatase3
Motif
Other DBs
NCBI-GeneID:
18106297
NCBI-ProteinID:
XP_006373968
UniProt:
U5FL65
LinkDB
All DBs
Position
16:11318481..11330371
Genome browser
AA seq
682 aa
AA seq
DB search
MVVTMDLNVLPGPEDNEDNFEGNIEEHGAPEERFESAAEIARREREERRKRMRNENLEDR
PAHVSRQPVHDQLFPSKHYKSYDKSKLPAGWLDCPAFGQEINCIVPSKVPLGEAYNDCIP
PGKRYSFKQVIHQQRVLGRKLGLVIDLTNTTRYYSTTDLKKEGIKHVKIYCKGRDAVPEN
TAVNTFVYEVMQFLLRQKHTKKYILVHCTHGHNRTGYMIVHYLMRSQPMSVTQAIKIFAE
ARPPGIYKPDYIDALYSFYHERKPEMAVCPPTPEWKRSSEFDLNGEAVPDDDDDGGSAKN
LHDNHEMDVVMTNDDVLGDEIPNDQLDALRQFCCQTLKLNVPGRGKPIFPGSHPVSLSRD
NLLLLRTRYYYATWKADGTRYMMLITVDGCFLIDRDFKFRRVQMRFPCRYTNEGPADKTH
HFTLLDGEMIIDTLPDSQKQERRYLIYDMMAINRESVTERPFHERWKMLEKEVIEPRNYE
RHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIPKLSHDADGLIFQGWDDPYV
PRTHEGLLKWKYPEMNSVDFRFEVDDDDRQLLYLNERGTKKLMEGHRVAFKDDLDPSSYS
GKIIECSWASEEHVWVCMRVRTDKSTPNEFNTYKKVMRSIKDNITEDVLLNEIYEIIRLP
MYADRIRIESKAQQHANASRRR
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggttgttaccatggatttaaatgttttgccggggcctgaagataacgaagacaatttt
gaagggaacatagaagaacacggcgctcccgaagaacggtttgagtctgctgctgaaatt
gcccgccgggagcgtgaagaaagacgcaaacgtatgagaaatgaaaatttggaagacaga
cctgcgcatgtgtctcggcaaccagtgcatgatcaacttttcccatccaaacactataaa
tcttatgacaaaagtaaacttcctgctggctggttggactgtcctgcatttggccaggag
ataaattgtatcgttccttccaaggttccacttggcgaagcctacaatgactgtattcct
cctggtaaaagatactcttttaaacaagtcattcatcaacaaagagttttaggaaggaaa
ctcggtctggtgattgatttgacaaatactacccgctactattcaacaacagatttgaag
aaagagggtatcaagcatgtcaagatatattgcaaggggcgtgatgctgtaccagagaat
acagctgtaaatacctttgtttatgaggtcatgcaatttctcttgcgtcagaaacataca
aagaagtatattcttgtccattgtacacatgggcataatcgcacaggatatatgatagtt
cattatctaatgcgttctcaaccaatgtctgtcactcaagcaataaaaatatttgctgaa
gcacgtcctccaggaatatataaaccagattatattgatgccttgtactccttctatcat
gaaagaaagccagaaatggctgtttgcccaccaactccagaatggaagaggtcttctgaa
tttgatctcaatggcgaggcagtgcctgatgatgatgatgatggaggttcagctaagaac
ctgcatgacaatcatgagatggatgttgtaatgacaaatgatgatgttctgggggatgaa
atacctaatgaccagctcgatgcactgcggcagttctgctgccaaacacttaagctgaat
gttcctggaagaggaaaaccgatattccctgggtcacaccctgtttctctcagcagggac
aacttactgctgctgaggacgcgttattattatgcaacatggaaggctgatggaacaaga
tacatgatgttaattacggtggatgggtgttttttgatagatagggattttaaattccga
agggtacagatgaggtttccttgcagatacaccaatgaaggtccagctgataagacacac
cactttacgttacttgatggggagatgattattgatactttgccggactcgcagaagcag
gagagaagataccttatctatgatatgatggcgatcaaccgagagtctgtcacagagcgg
ccctttcatgaacgatggaagatgcttgaaaaagaagtgatcgagccccggaattatgaa
cgccataacatttaccagagtcgaaatccatattatagatatgacctggaacctttcagg
gtgagaagaaaggatttctggctgctttctactgttaccaagctcctaaaggaatttatt
ccaaagctttcacatgatgcagatggtcttatttttcagggttgggatgatccttatgtt
cctcgcactcatgaaggccttttgaagtggaaatatcctgaaatgaactcagttgacttt
cgatttgaggttgatgatgatgatcgtcagttactttatctgaatgaacgagggacaaag
aaactgatggaaggccacagagttgcattcaaagatgatttagatccctcttcatactca
gggaagataattgagtgttcttgggcctcagaggaacatgtatgggtctgtatgcgggtg
cggactgataaatcaacacccaacgagttcaatacctacaagaaggtgatgcgaagcatc
aaggataatataacagaggatgtgttgttgaatgagatttacgagatcattcgcctgccc
atgtatgctgataggatcaggattgagagtaaagctcagcagcatgcaaatgcatctcgg
cgtaggtga
DBGET
integrated database retrieval system
