Populus trichocarpa (black cottonwood): 18106342
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Entry
18106342 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18106342
KO
K02977
ubiquitin-small subunit ribosomal protein S27Ae
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03010
Ribosome
pop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
18106342
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
18106342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
pop03011
]
18106342
04121 Ubiquitin system [BR:
pop04121
]
18106342
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
18106342
Ribosome [BR:
pop03011
]
Ribosomal proteins
Eukaryotes
Small subunit
18106342
Archaea
18106342
Ubiquitin system [BR:
pop04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
18106342
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
18106342
Exosomal proteins of colorectal cancer cells
18106342
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ubiquitin
Rad60-SLD
Ubiquitin_2
Dsc3_N
Rad60-SLD_2
DUF2604
Motif
Other DBs
NCBI-GeneID:
18106342
NCBI-ProteinID:
XP_006374031
UniProt:
U5FKY2
LinkDB
All DBs
Position
16:complement(13125261..13125632)
Genome browser
AA seq
123 aa
AA seq
DB search
MQIFVKVPSEKTLTLDVLPSDTISIVKTKIETKEGVPLDRQRLIFAGKLLEDNETLADYK
IQKECTLHLMLRLRGGAKKKTYNTTKKVKHEKEKENLAVLKFYKVSDESGNVHGEAEEGV
PRV
NT seq
372 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatctttgtgaaagtcccatcagaaaaaaccctaacgctcgatgtgttaccttcg
gacaccatcagcatcgtcaaaactaagattgaaacgaaagaaggagtcccactagaccgg
caacgcctaatcttcgcaggcaagcttcttgaagacaacgaaaccctagccgactacaaa
atacaaaaggagtgcactctccatctcatgcttaggcttcgagggggtgctaagaagaag
acatacaacacaacaaagaaggtcaagcacgagaaagagaaggagaatcttgctgtcttg
aaattttataaggtgagtgatgagagtggcaacgtgcatggagaggctgaggaaggagtg
cccagagtatag
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