Populus trichocarpa (black cottonwood): 18106377
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Entry
18106377 CDS
T01077
Name
(RefSeq) serine/threonine-protein kinase rio2
KO
K07179
RIO kinase 2 [EC:
2.7.11.1
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
18106377
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pop01001
]
18106377
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pop03009
]
18106377
Enzymes [BR:
pop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
18106377
Protein kinases [BR:
pop01001
]
Serine/threonine kinases: Other
RIO family [OT]
18106377
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
Pre-40S particles
Kinases
18106377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIO1
Rio2_N
APH
ABC1
Kdo
OspG_kinase
Pkinase
TCAD9
Motif
Other DBs
NCBI-GeneID:
18106377
NCBI-ProteinID:
XP_006372310
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Position
17:complement(70394..75299)
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AA seq
467 aa
AA seq
DB search
MKLDVEVLRYLSKDDFRVLTAVEMGMRNHEIVPAELIDRIASLKHGGTYKVLKNLLKHKL
VHHDSSKYDGFRLTYLGYDFLAIKTLVNRGVISSVGRKLGTGKESDIYEVAAEDGTVLAM
KLHRLGRVSFRAVKSKRDYLRHRSSFNWLYLSRLAALKEFAFMKALEEHGFPVPNAVDCN
RHCVIMSLVQGYPLVQVKELQNPETIFETVLGVIVRLAEHGLIHCDFNEFNIMIDDDEKV
TVIDFPQMVSVSHRNAQMYFDRDVECIFKFFQKRFNLSFQVSTDDNEGSDADTDETGWPS
FSSISKSSGFLDKELAASGFSRKDQEDIEKFIEEDIDDTDSDREESEDKQFVESTEANVK
GLSSLPLEELEEQTSNSDEDGVEVKQQSCEAGQDNRAEIQDDSDKEEDNQSAIENDAELN
KSLNKQRKRAVAAARGGRRSFASRNSYKDKGGKSSQNSRIQKQLCSW
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaagctagacgtcgaagtgttacgttatctctcaaaggacgacttcagggtgttaaca
gccgtagagatgggcatgcgaaaccacgaaatagtccccgccgaactcatagaccgaata
gcctctctaaaacacggaggcacctacaaagtccttaagaacctcctcaagcacaagctc
gtccaccacgactcctccaaatacgacggtttccgtctcacttacctcggctacgatttc
ctcgccatcaagacccttgttaatcgcggtgtcatttccagtgtcggtcgtaaattgggg
actggtaaagaatccgatatctatgaggttgctgctgaagacggtaccgttttggccatg
aagttgcatcggcttgggagggtttcttttagagctgttaagtctaagagggattatttg
aggcatcgctctagttttaattggctttacttgtctagactcgctgctcttaaagaattc
gcctttatgaaggcattggaagagcatgggtttccggttccaaatgctgtggattgtaat
aggcattgtgtgatcatgtcacttgttcaaggttatccacttgtccaggtgaaggaatta
caaaatccagaaactattttcgagacggtacttggcgttattgttcgtttggcagagcat
ggccttattcactgtgatttcaatgagtttaacattatgattgatgatgatgagaaggtc
accgtgattgattttccacagatggtttctgtatctcatcggaatgcgcagatgtacttt
gaccgtgatgttgaatgcatctttaagttttttcagaagaggtttaacctctcttttcaa
gtaagcacagatgataatgagggctctgatgcagacacagatgaaactggctggccatcc
ttttcctcaatatccaaatcttctggttttcttgacaaggaacttgctgccagtggcttc
tcaaggaaagatcaggaggacattgagaaattcattgaagaggacatagatgatacagac
tctgacagagaggaatctgaagataaacagtttgttgagtcgacggaagcaaatgtcaag
ggtttaagttctttgcccttggaggagctggaagagcaaacttcaaactctgatgaggat
ggggtagaggttaagcaacagagttgcgaagcaggtcaagataacagggctgaaattcaa
gatgacagcgacaaggaagaagacaatcaaagtgcaattgaaaatgatgctgaactgaac
aagagtctaaacaagcaaagaaaacgtgccgtggcagcagctcgtggggggcggaggagt
tttgcatccagaaactcttacaaagacaagggtggcaaatcctcccaaaactcccgaatt
cagaaacaactgtgcagctggtga
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