Populus trichocarpa (black cottonwood): 18106381
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Entry
18106381 CDS
T01077
Name
(RefSeq) cysteine protease ATG4 isoform X2
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
18106381
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pop01002
]
18106381
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
18106381
03029 Mitochondrial biogenesis [BR:
pop03029
]
18106381
Peptidases and inhibitors [BR:
pop01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
18106381
Membrane trafficking [BR:
pop04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
18106381
Mitochondrial biogenesis [BR:
pop03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
18106381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
Motif
Other DBs
NCBI-GeneID:
18106381
NCBI-ProteinID:
XP_006372315
LinkDB
All DBs
Position
17:27721..33518
Genome browser
AA seq
482 aa
AA seq
DB search
MKGFRERGFVASSKSSSTAESPHRSFTSDSSELGSADTKFSKPSLWSTFFASAFSVFDTH
CDSSSTSEKKAPHIRHGNGWTSAVKKIVAGGSMRRIQECVLGTSKTGISNTTGDIWLLGA
CYKISQDNSSGDAAATNALAAFNHDFSSRILITYRKGFDAIEDSKLTSDVSWGCMLRSSQ
MLVAQALLFHRLGRSWRKPLDKPLDREYVEILHLFGDSESSAFSIHNLLRAGKAYGLAAG
SWVGPYAVCHSWESLVRSRREETNLEYQSLSMAVYVVSGSEDGERGGAPVLCIEEAARHC
SEFSKGQEDWTPILLLVPLVLGLDKINPRYIPSLQATFTFPQSLGILGGKPGASTYIVGV
QDENAFYLDPHEVQPVVNVSRDDVEANTSSYHCNVVRHMPLDLIDPSLAIGFYCRDKDDF
DDFCTLASKLTDESNGAPLFTVAHSRKLLKHDSGEVRSDDSLGVMTMNDVEGCVHEDDWQ
LL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaagggttttcgtgaaagggggtttgttgcttcttccaaatcttcatctacagctgaa
tccccacatagatctttcacttctgattcttcagaactggggtccgccgacaccaagttt
tccaagccttctttatggtcaaccttctttgcatcagctttctctgtctttgatacacat
tgcgattcatcttcaactagtgaaaaaaaagcacctcatattagacatggtaatggttgg
acgtcagctgtgaagaaaattgtggcaggtggctcaatgaggaggatccaagagtgtgta
ttagggacaagcaagacagggatttctaacacaactggtgacatttggctcctaggagca
tgctacaagatttcacaagataattcttctggggatgctgctgctaccaatgctttagct
gcctttaatcatgatttttcttcacgaattcttatcacatatagaaaagggtttgatgct
attgaagattcaaaacttaccagtgatgtaagctggggttgtatgcttcggagtagtcag
atgcttgttgctcaggcattgctttttcatcgattagggagatcttggagaaaaccattg
gacaagccattggatcgagaatatgttgagattttacatctttttggtgattcggagtca
tcggctttctctattcataatcttcttcgggctggaaaggcttatggccttgcagctggg
tcatgggtaggcccttatgcagtgtgccactcttgggaatctctagtccgctctagaaga
gaggaaaccaatcttgaataccagtcactttcaatggctgtttatgttgtttctggttct
gaagatggggagcgagggggggctccagttctctgcattgaagaagccgctagacattgt
tcagagttttctaaaggtcaagaagattggacgccaattcttctattggttcctttggtt
cttgggcttgataaaataaatccaaggtatattccgtccctgcaagcaacattcaccttt
ccccaaagccttggaattttgggtgggaaacctggtgcttcaacatatattgttggtgtg
caagatgagaatgctttttatcttgatccacatgaagttcagccggtggtcaatgttagc
agagatgatgtagaggccaatacttcatcttaccactgcaatgttgtgcggcacatgcct
ctggacttgattgatccatccttggcaattggattttattgtcgagacaaagatgatttt
gatgatttctgtacgctggcatccaagctgacagacgaatcaaatggtgcacctttgttt
acagtggctcattcccgtaaattattaaagcatgatagtggcgaggttcggtcggatgat
tcccttggtgtgatgactatgaatgatgtagagggctgtgtacacgaggatgactggcaa
ctcctttaa
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integrated database retrieval system
