Populus trichocarpa (black cottonwood): 18106796
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Entry
18106796 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18106796
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pop03009
]
18106796
04121 Ubiquitin system [BR:
pop04121
]
18106796
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
90S particles
Other 90S particles
18106796
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
18106796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Sof1
WD40_CDC20-Fz
WD40_Prp19
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
WD40_RFWD3
eIF2A
PROPPIN
Beta-prop_NUP159_NUP214
Beta-prop_IFT122_1st
Beta-prop_Vps41
VID27
Motif
Other DBs
NCBI-GeneID:
18106796
NCBI-ProteinID:
XP_006372746
UniProt:
U5FHE1
LinkDB
All DBs
Position
17:complement(1008394..1014263)
Genome browser
AA seq
452 aa
AA seq
DB search
MKVKVISRSTDEFTRERSQDLQRVFHNFDPNLRTQEKAVEYQRALNAAKLDKIFARPFIG
AMDGHIDAVSCMAKNPNYLKGIFSGSMDGDIRLWDIANRRTVCQFPGHQGAVRGLTASTD
GSTLVSCGTDCTVRLWNVPVATIMDSDNLSDCSSEPRAVYMGENAFWAVDHQWNGDLFAT
AGAQVDIWNHNRSQPVNSFKWGTDSVISVRFNPGEPNLLVTSASDRSIILYDLRVSSPAR
KLIMRTKTNSISWNPMEPMNFTAANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDFSPT
GREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK
AKASEQLGVLLPREQKRHEYNEALKNRYKHLPEVKRIVRHRHLPKPIYKAGVLRRVMIEA
ERRKDQRRKAHSAPGSIVTEPMRKRRIIKEVD
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgaaagtaatttcacgatctaccgatgaattcactcgagaacgtagccaagat
ctccaaagagtgtttcacaattttgatccgaatctaagaacacaagagaaggcggtggag
taccagagggcacttaatgctgccaaattagataagatatttgcaaggccgtttattgga
gcgatggacggtcatattgatgcagtttcgtgtatggcgaaaaatccgaattacttgaaa
gggatattttctggttctatggatggagatattcgcctttgggatatagctaataggaga
acagtttgtcaatttcctggtcaccagggtgctgtaagaggtttgactgcctctacagat
gggagtactcttgtatcttgtggaactgattgcactgtcaggctctggaatgttcctgta
gctactattatggattcagacaacttgtctgactgttcatctgagccacgggcagtttat
atgggggaaaatgcattttgggctgttgaccaccaatggaatggtgatctctttgccact
gctggtgctcaagtagatatttggaatcataataggtctcaaccagtgaacagctttaag
tggggaacagactcagttatttctgtccgatttaatccaggggaaccaaatctcttggta
acatcagcaagtgatcgcagcataatattgtatgacttgcgtgtgtcatctccagcaagg
aaacttattatgaggacaaaaactaattctatttcttggaacccaatggaacccatgaac
ttcacagctgcaaatgaggattgcaactgctatagctatgatgccagaaaattggaagaa
gccaagtgtgtgcacaaagatcacgtttctgcagtgatggatattgatttctcgccaacg
ggtcgggaattcgtaactggatcctatgatagaacagttagaattttccagtataatgga
ggtcacagtcgggaaatctatcacacaaagagaatgcaaagggtattctgtgtcaagttc
agctgcgacgcaagctatgttatttcaggaagcgatgacacaaatctgaggttatggaaa
gctaaagcatcagaacaattgggagttctactaccaagggaacagaaaaggcatgaatac
aacgaagcgctaaagaatcgctacaagcaccttcctgaggtcaagcgcattgtgaggcat
aggcatttgcccaaacctatatacaaggctggtgtccttcgccgtgtaatgattgaagct
gaaaggaggaaagatcaaaggaggaaagctcacagtgccccgggaagcattgtaactgaa
ccaatgcgaaaaagaagaattattaaagaagttgattga
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