Populus trichocarpa (black cottonwood): 18107083
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Entry
18107083 CDS
T01077
Name
(RefSeq) probable methionine--tRNA ligase
KO
K01874
methionyl-tRNA synthetase [EC:
6.1.1.10
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00450
Selenocompound metabolism
pop00970
Aminoacyl-tRNA biosynthesis
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
18107083
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
18107083
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pop01007
]
18107083
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pop03016
]
18107083
Enzymes [BR:
pop01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.10 methionine---tRNA ligase
18107083
Amino acid related enzymes [BR:
pop01007
]
Aminoacyl-tRNA synthetase
Class I (U)
18107083
Transfer RNA biogenesis [BR:
pop03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
18107083
Prokaryotic type
Other AARSs
18107083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1g
tRNA_bind
Anticodon_3
tRNA-synt_1
CoV_peptidase
Anticodon_1
tRNA-synt_1e
DUF3952
Zn_dep_PLPC
Phage_holin_6_1
Motif
Other DBs
NCBI-GeneID:
18107083
NCBI-ProteinID:
XP_006373073
UniProt:
B9N0S4
LinkDB
All DBs
Position
17:complement(4587427..4593445)
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AA seq
801 aa
AA seq
DB search
MGDLDRPVPKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIY
ICGTDEYGTATETKAMEENSTPKQICDKYHAIHREVYKWFNISFDEFGRTSSPQQTEVCQ
AIFKKLLDNNWLSENTMKQLYCDTCERFLADRLVEGTCPTEGCNYDSARGDQCENCGKLL
NPTELINPRCKQCKNTPRIRDTNHLFLELPQLKDKLVSYIESMSVAGSWSQNAIQTTNAW
LKEGLKPRCITRDLKWGVPVPLDEFKDKVFYVWFDAPIGYVSITSCYTPDWEKWWKNPDN
VELYQFMGKDNVPFHTVMFPSTLIGTGENWTMMKTISVTEYLNYEAGKFSKSKGVGVFGN
DAKDTNIPVEVWRYYLLTNRPEVSDTLFTWSDLQAKLNSELLNNLGNFINRVLSFLAKPP
GLGYGSIIPDAPGADSHPLTKKLAGEVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAY
LQESQFWKLYKEDQPSCSIVIKTSLGLVYLLACLLEPFIPSFSVEVFKQLNLPLEQASLC
DEKGDMDRAKRPWEILPAGHKIGTPEPLFKELKDEEVEDYRRRFAGSQADRLERDEAEKA
AKLAEQLKKKASVGGGKKQQAKKPASEAKSKGSVEREISITRLDIRVGLIKKVQKHPDAD
SLYVEEIDLGEGDCRTVVSGLVKYIPLEEMQNRKVCVLCNLKPASMRGIKSQAMVLAASN
SDHTKVELVDPPPSAVVGERVTFQGFEGEPDDVLNPKKKVWETLQVDLQTNSDLIACYKD
IPLTTSAGVCKVASISCGSIR
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgggagatctcgatcggccggtcccgaagctaccgatcccgggaaagcgaaacatactg
ataaccagtgctttgccttatgtcaataacgtccctcatctcggcaacattatcggctgc
gtgctgagtgctgacgtgtttgctagatactgtcgtctccgaggatataatgcgatttat
atttgtggaactgacgagtacgggactgcgactgagactaaagccatggaggagaattct
acccctaaacaaatttgtgacaagtatcacgcgattcatagggaggtttataaatggttt
aatataagttttgatgaatttgggcggacgtcgagtccgcagcaaactgaagtttgtcaa
gcaatttttaagaaattgttagataataactggctttcggagaatacaatgaaacagctg
tactgtgatacatgtgaaagattcttggctgatcggcttgtggaaggtacttgtcctaca
gaaggatgtaattatgactctgcacgaggagatcagtgtgaaaattgtggaaagcttttg
aatccaaccgagttaataaatcccaggtgcaagcaatgtaagaatacaccaagaatccgc
gatacgaaccacttgtttcttgagcttcctcagctgaaggataaattagtaagctatatc
gagagtatgtcagtagctggatcttggagccaaaatgccattcaaacaacgaacgcatgg
cttaaagaaggactaaaaccacgatgcattactagggatctgaagtggggtgttccagtt
ccacttgatgaatttaaggacaaggtgttttatgtttggtttgatgctcctattggatat
gtatccattacttcttgctacactcctgattgggagaagtggtggaagaatcctgataat
gtggagctgtatcagtttatgggaaaagacaatgtaccattccacactgtgatgtttcca
tcgacacttattggaacaggcgaaaattggaccatgatgaagactataagtgtaactgaa
tacttaaattatgaagcagggaagttttccaagagtaagggtgtaggagtgtttggaaat
gatgcaaaggatacaaatattcctgtagaagtttggagatattatctgctaaccaatagg
cctgaggtgtctgacacactatttacatggtctgatttgcaagcaaaacttaacagcgag
ctgctgaataatttgggcaactttattaatcgagttctgagctttcttgctaaaccacca
ggtttgggatatggttctatcattccagatgctccaggtgcagactcccatcccttgaca
aagaaattggctggagaagttggtaaatatgtagagcagtacctggaagccatggagaag
gttaagttaaagcaaggattgaaaactgcaatgagcatttctagtgaggggaacgcctat
ctgcaagaaagccaattttggaagctttacaaggaagaccaaccttcttgttccatagtt
ataaagacttcattgggtctagtatatcttcttgcatgtttattggaacctttcatacca
tctttctctgttgaggtcttcaagcagcttaatttgcctcttgaacaagcttcactttgt
gacgagaaaggcgatatggatagggcaaaaagaccttgggagatcctacctgctgggcac
aagattggaactccagagcccttgttcaaggaactgaaagatgaagaagtggaggactac
aggaggagatttgctggaagtcaggctgatagacttgagcgggatgaagctgaaaaggca
gccaagcttgccgagcaactgaagaaaaaagcttcagttggtggtgggaagaagcaacag
gccaaaaaacctgcttctgaagccaaatcaaagggcagtgttgaacgagaaatctccatc
acaagacttgatatccgtgttggcctaattaagaaagttcagaagcatcctgatgctgat
tcgttgtatgtggaagaaatcgatttgggtgaaggagattgtagaacggttgttagtgga
cttgtcaaatatatacctcttgaggagatgcagaatcgtaaggtctgcgtcctttgcaac
ctaaagccagcatccatgaggggcattaagtcacaggctatggttcttgctgcttccaat
agtgaccacacaaaggtcgaattggttgatccacccccatccgctgttgttggagagaga
gttacatttcaagggtttgaaggtgaacctgatgatgtcctaaaccctaagaagaaggtc
tgggagacactacaggtggatctgcaaactaacagtgacctgatagcctgctacaaagat
attccgctaaccacatctgctggtgtgtgcaaggttgcatccattagttgtggttccatt
aggtag
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