Populus trichocarpa (black cottonwood): 18107225
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Entry
18107225 CDS
T01077
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1 isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18107225
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
18107225
Surveillance factors
Other surveillance factors
18107225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
18107225
NCBI-ProteinID:
XP_024448064
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All DBs
Position
17:complement(5685688..5693719)
Genome browser
AA seq
1610 aa
AA seq
DB search
MTDGKLNLPDDLLLSSKSADERLSSFKDQLTVDNTIPLSPQWLYAKPVDAKSLTAGASGE
TRASNSLSLGNSIDNNLKDNWRLDGTQDKKDRRRIASDIESSRRWREEERDTGLLGRRDR
RKEDHRADSVSTRDISENRTLSSSDRWHDSNNRISGHESRRDSKWSSRWGPEDKEKGSLT
DKRADVEKEDTHSDKQNFGTASRPTSDLENDSRDKWRPRHRMEVHAGGPAVYRSAPGFGS
DRGRVESSNVRFAAGRGRSNNSGNFQNGRHLNSSPIGSIPVNKNHAFCYPRGKLLDIYRK
HKTLPSFDPMPDGMEHASPITQETAIKPLAFVSPDAEEEAVLGDIWQGKITSSGGLKSSF
RDNDTSNNNTAGFGEVPLGEGNPNSSVKTEEIADSFGKITVNASGQGIGSEMLDTSMAEE
KDSQKDGTQKLTTTIGRELTDDFVRAVSKKDDCSVGECGPSDNVVELKAFETSSVEDVAS
KKHLKLGDNEPTTFEIGSQLPGDSSSLFDFIIPLEELSLCYLDPQGAIQGPYLGIDIIAW
FEQGYFGTDLPVCLSDAPSGLPFFELGDIMPHLKFKPGCASSTSPSAKLQLSEPVGENLE
GSALPPASSLEFKGSSVSEELQYASSGFEAIPSVSGQSRTPDHGFRPRTVDSDDQRFQNI
VSLDEEIVFPGRPGSSGNPVMTDAADIQSFVSNPPSHPVILNEFSETGMLTHQDEIVHPF
GLLMSELRSNSHPKHAQASYLASSMSEGHAMDPYTERDAALASHRSFDLVSDQSRYTDTW
PEDYSKKPLMNPHIDLGTTDTRHLFQRQPEFNDFDQQHLMPQKMQNERQQQNHVSHPFLQ
ELGFEQIPSHLIELQFQQQRKLELQQQWQLELQRLELQRQQQLELQRQQQLEVQRQRQLE
VQRRQQLELQRRQQFELQRRQQLEHQRRQQFELQQQQQQFELQQQHHLLHQQQQQQQLHQ
YQMKLQQQQVLEQLLQHQMSDLGYGQGKGDPMRDNLVDQSQFRTLLPELQRNLHIPRHLD
LSLEQVIRAKIGQNNLQEPQTDILDLLSQVKHGNILPSDLQFHHQLEQMQAQELSLARST
GFNTSDCHLQQQRQSSHDEHLSHIKWNHALQELHQGGFYEPSSMAFDHPTSLPAITLGIK
LDNVNGHSQGPDSAEHLYMHPAEQLGSVSSNAPSCDQQVLDDIYASHPEMTENYFPGKRR
QQENSWVEGGMQQLHHENERKRNVSEASGNSSIWLSGQRDEESSKQVLMDLHQKIGLQSI
HSSEDDYGHLTSSSKSRESFWPITDSSSSNHNPDQEVAMNNSFMDRPQHLNSNSLLHDNP
AMALSGQLHLGNGERLHGSNSGALLEEPTFLSGMIDTSQANHVDNRFGSKYTKDKDLAEL
DNRSGSKCVRAMSRSVSHIEENFVEQAETAMDLVNAHSRHSSLSSAGGYGGLHGYEMGLD
NSTSEEVSNDRVILSKGLDNSLHKHPPVSRALSSLDALSDMGSASHNKHKNPTSIATSDE
RRNESVENLAAAWGGDTQASGMKEVRFRRTASYNDAGITETSFIDVLKKPVFSEAEAANA
AALESSDGSLTGRSGKKKGKKGRQIDPALLGFKVSSNRIMMGEIQHLDDN
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atgactgacggaaagctcaatctacctgacgatctcctcctctcctccaaatcagctgat
gaacgcctctcctccttcaaagatcaattgactgtggacaacacaataccactttctcct
caatggctttatgctaagccggtggatgctaagtcattaactgctggagcatcaggggaa
actcgtgcatcaaattctttgtcccttggaaactccattgataacaatttgaaagacaat
tggcgtttagatggaacccaagacaagaaagatcggaggaggattgcttctgacatagaa
agtagccgtcgctggcgtgaggaggagagggatacaggcttgcttggtagaagagatcgc
agaaaagaggaccatcgcgctgattctgtttcaaccagagatatatctgagaataggact
ttgtcttcttcagatcgttggcatgacagcaataaccgcatttctgggcatgaatcccga
agagacagcaagtggtcatctaggtggggtccggaagataaagagaagggttctttaact
gataagagggcagatgttgagaaggaagacactcacagcgacaaacaaaattttggcaca
gctagccgcccaacttctgaccttgagaatgattctcgtgataagtggaggcctcgccat
cgtatggaagttcatgctggtggacctgctgtgtaccggagcgcacctggatttgggtca
gatagaggacgagtggagagctcaaatgtgcggtttgctgctggacgagggaggtctaac
aatagtgggaactttcaaaatggcaggcatcttaattcttctcctattgggtccattcct
gtgaataaaaatcatgcattctgttatccaaggggaaaacttcttgacatttaccgaaag
cataagactcttccaagttttgatcctatgccagatgggatggaacatgcatctccaata
acacaggaaactgctatcaagccattggcttttgtttcccctgatgcagaggaagaggct
gtccttggagatatatggcagggaaaaatcacaagcagtggaggattgaaaagctcattt
agagacaatgacacatcaaataataatactgcaggctttggtgaggtgcctttaggtgag
gggaacccaaattcctctgttaagactgaagaaattgctgactcttttggaaaaattact
gttaatgcttctggtcaaggtattggttctgagatgttagatacatcaatggccgaggaa
aaggattcacaaaaagatggcacacagaagcttacaacaacaattggcagagagttgacg
gatgactttgtgcgtgcagtttccaagaaagacgattgcagtgtcggggagtgtggtcca
agcgacaatgttgtggagttgaaagcttttgaaacgtcatcagtggaagatgtggcttca
aagaagcaccttaagttgggggataacgagccaactacttttgagattggtagccagctt
cctggtgattccagttctctatttgattttattattccactcgaggagctatcattgtgc
tatcttgatcctcaaggggcaatccagggaccgtaccttggtattgatatcattgcatgg
tttgagcaaggatattttggaactgatctaccagtttgtttgtcagatgctcccagtgga
ttaccgttctttgagcttggagatattatgcctcaccttaaatttaaacctgggtgcgct
tcaagcactagtccatctgctaagttacaactatcggaacctgttggagaaaacttggaa
gggagcgcactgcctcctgcttcttctcttgaattcaagggttcttctgtcagcgaagaa
ctgcagtatgcctcatctggatttgaggccatccctagtgttagtggtcagtcaagaaca
cctgatcatggttttcgccccaggacagtggattctgatgatcaaagattccaaaatatt
gtttctttggatgaagaaattgtctttcctggaaggcctggaagcagtggcaaccctgtg
atgacagatgccgcagacattcagagttttgtttctaatcctcctagccaccctgtcatc
ttaaatgaattttcagaaactggcatgcttactcatcaggatgaaatagttcatccattt
ggcttgctgatgtctgagctcagaagcaactctcatccaaagcatgctcaagcatcctat
ctggcttcaagcatgagtgagggtcatgctatggatccttatacagagcgtgatgctgct
cttgctagccacaggtcctttgatttagtatctgatcaatcccgttatacagatacatgg
cctgaagattatagtaaaaagccactcatgaacccccacattgatctaggtaccacagac
actcgacacttatttcagaggcaacctgagttcaatgattttgaccagcagcatctcatg
ccacagaagatgcaaaacgaacgtcaacaacagaatcatgtatctcatcccttcttacaa
gaactgggttttgagcaaatcccttctcatctgattgaactgcaatttcaacagcagaga
aagttggagctccaacaacagtggcagttggagcttcaacggttggagcttcaacggcag
cagcagttggagcttcaacggcagcagcagttggaggttcaacgtcagcggcagttggag
gttcaacgtcggcagcagttggagcttcaacgtcggcagcagttcgagcttcaacgtcgg
cagcagttggagcatcagcggcggcagcagtttgagcttcagcaacagcagcaacagttt
gaacttcagcaacagcatcatttactgcatcaacagcagcagcaacaacagcttcatcag
taccaaatgaaattgcagcagcagcaggttctggaacagttgctgcagcatcagatgtct
gatcttggctatgggcagggaaagggagatccaatgagagacaacttggttgatcagagt
caatttaggacactacttccagaactgcagcgaaatctgcatattccaaggcacttggat
ctgtcactggagcaggtaattcgagcaaagattggccagaataatcttcaagaacctcag
actgatatcttagacctcttatcacaggtgaagcatggtaatatattgccttcagacctg
caattccatcatcagctagaacagatgcaggcgcaagagttgtctttggcaaggtctaca
ggatttaacacttcagattgtcacctgcaacagcagaggcaatcctcacatgatgaacat
ttaagccacatcaaatggaatcatgctttacaggagttacatcagggtgggttttatgag
cctagctctatggcatttgaccatccgacttctcttcctgctatcacactagggattaag
ttggataatgtaaatggtcattcccaaggtccagattcagcagaacatctatatatgcat
cctgctgagcaactgggttctgtttcttcaaatgctccctcttgtgaccaacaagttctt
gatgatatttatgcttctcatcctgaaatgacagagaactacttccctggaaaacgaagg
cagcaagagaatagttgggttgaaggagggatgcaacagctgcatcatgaaaatgaaaga
aaaagaaatgtttcagaagcttcaggaaactctagtatttggttatcaggtcaacgagat
gaggagagctcgaagcaagttttaatggatcttcaccaaaaaataggtcttcagtctatt
cactcatcagaagatgattatgggcaccttacatcctcttcaaagtctcgggaatccttt
tggccgatcactgattcatcttcttcaaatcataatccagatcaagaagttgccatgaat
aactcatttatggataggcctcaacatttgaactcaaattctctgttgcatgataatcct
gccatggccttgagtggtcaattacacctaggaaatggtgaaagattgcatgggtcaaat
tctggagcactactggaagaaccaacttttttgtctggcatgatagatacttctcaagct
aatcatgtggataacaggtttggttcaaaatataccaaggataaagacttggcagaattg
gataacagatctgggtccaaatgtgtgagggccatgtccaggtctgtttcacacattgaa
gaaaactttgttgaacaagctgaaactgctatggatcttgttaatgcccatagcaggcat
agttcactaagcagtgctggtggatatggaggcttacatggctatgagatgggattagat
aattcgaccagtgaagaggtttctaatgacagggttatattaagtaaagggcttgacaat
tccttgcataaacacccaccagtgtcccgagccttatcttccctggatgctttgtcagac
atgggatctgcttcgcataacaagcataaaaatccaacaagcattgcaacttctgatgaa
aggaggaacgagtctgtagagaatttagcagcagcatggggaggtgatactcaagcatct
ggcatgaaagaagtgcgttttaggaggactgcgtcttacaatgatgctggtataacagag
acatcattcatagatgtgctaaaaaagcctgttttttctgaggctgaagcagctaatgcg
gctgccttggaatcatctgatggttcactgactggacgaagtgggaaaaagaaagggaag
aaaggaaggcagattgatcctgctctccttggcttcaaggtttctagcaatcgcattatg
atgggtgagatacaacatcttgatgacaactga
DBGET
integrated database retrieval system
