Populus trichocarpa (black cottonwood): 18107230
Help
Entry
18107230 CDS
T01077
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18107230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
18107230
03036 Chromosome and associated proteins [BR:
pop03036
]
18107230
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
18107230
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
18107230
PBAF complex
18107230
GBAF(ncBAF) complex
18107230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
YEATS
Motif
Other DBs
NCBI-GeneID:
18107230
NCBI-ProteinID:
XP_006373227
LinkDB
All DBs
Position
17:5796522..5799723
Genome browser
AA seq
547 aa
AA seq
DB search
MSMNNNSTPKSLGQSSSPLGNSGMVNPSMGANPSFSQSQGQMGAAFQGGQFQLSQAQATV
QAHLKAQQAHAQAQAVHAAQIQAAHVQLQAQGISLNQTQNVGIGNLGSSSPSFSTPGNAS
AKRLPQKPLGRPPGVPISSMVSPLKPMDLSSAARRKKQKLPEKQLQDRVAAILPESALYT
QLLEFEARVDAALARKKVDIQEALKSPPCVQKTLRIYVFNTFANQTRTIPKKPNAEPPTW
TLKVIGRILEDGLDPDQPGAVQKSNPLYPKFSSFFKRVTIQLDQRLYPDNHIIIWEHARS
PAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPALMEVLGIEVETRPRIIAAIWHYV
KARKLQNPDDPSFFICDAPLQKVFGESKMKFTMVSQRISPHLSPPQPIHLEHKIKLSGNS
PAGTVCYDVLVDVPFPIQRELFALLANAEKNKEIDTCDEAICTAIRKIHEHRRRRAFFLG
FSQSPVEFVNALIESQSKDLRLVAGEASRNAEKERRSDFFNQPWVEDAVIRYLNRKPAVG
SDAPGST
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgaacaacaactccacaccaaagagtttggggcaatcttcgtcaccacttggt
aattcggggatggtcaatccatcgatgggagcgaacccatccttctcacaatcacaagga
caaatgggtgctgcctttcagggtggtcagttccagctgtcccaagcacaggctactgtg
caagctcacttgaaagcacagcaggctcacgctcaagcacaagcagttcatgctgctcaa
attcaagcagctcatgtgcaactccaagcacaagggatctctcttaaccaaactcagaat
gttggcataggtaatttgggttcgtcttcaccgtcattctcaactcccgggaatgctagt
gcaaaacggctccctcagaaacctttgggtaggcctcctggtgttcccatttctagcatg
gtttcaccattgaaacctatggatctctcatctgctgcacgtagaaagaagcagaagcta
ccagagaagcagctacaagatagagtagctgcaattctgccagagtctgctctgtacaca
cagcttcttgagtttgaagctcgtgttgatgctgctttagctagaaagaaggttgacatc
caggaggcccttaaaagtcctccttgtgtgcagaaaacccttcgaatttatgtcttcaat
acatttgccaatcagacaagaacaatccccaagaagccaaatgctgagcctcctacttgg
actcttaaagttatcgggagaatcttggaagatgggttagaccctgaccagcctggagca
gtccagaaatcaaaccccttgtacccgaagttctcatcttttttcaagagagtgaccatt
cagttggatcagagactgtatcctgataatcatatcatcatatgggagcatgctcgatca
cctgcacctcacgagggttttgaagtcaagagaaaaggggataaagagttcactgtgaat
ataagattggaaatgaattatgtgcctgagaaatttaagctctctccagctttgatggaa
gttcttggtatagaggttgaaacccgtcctagaataatagctgcaatttggcattatgtg
aaggctaggaaactgcagaaccctgatgacccttcatttttcatttgcgatgcacctctt
cagaaagtatttggggaatcaaagatgaaattcacgatggtttcacagaggatatctccg
catttatctcctccacagccgatacatttggagcataaaattaagctttcagggaatagt
ccagctggaactgtctgctatgatgtgctggtggatgtgccatttccaatacagagggaa
ttgtttgctttgttggcaaatgccgagaagaataaagagattgatacctgtgatgaggca
atatgtactgctataaggaaaattcatgaacatcgaaggagacgggcattcttccttgga
tttagtcaatcacctgtggaatttgtcaatgctctgattgaatctcaaagcaaggatttg
aggctggtagctggagaagctagcagaaatgctgagaaagagcgccgctcggacttcttt
aaccaaccatgggttgaagatgctgttattcgttacttgaatcgcaagcctgctgtagga
agtgatgctcctgggagcacatga
DBGET
integrated database retrieval system
