Populus trichocarpa (black cottonwood): 18107254
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Entry
18107254 CDS
T01077
Name
(RefSeq) sister chromatid cohesion 1 protein 2 isoform X1
KO
K06670
cohesin complex subunit SCC1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
18107254
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
18107254
BRITE hierarchy
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GFIT
Motif
Pfam:
Rad21_Rec8_N
Rad21_Rec8
CNDH2_N
Motif
Other DBs
NCBI-GeneID:
18107254
NCBI-ProteinID:
XP_024445195
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Position
17:6502232..6511063
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AA seq
818 aa
AA seq
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MFYSHCLLSRKGPLGSIWVAAYYFKRLKKAQVTSTDISSSVDKILQDGFDVVTYRVLAYL
LLGVVRIYSKKVEYLFDDCNKVLLNVKDFVLCNKDGILVETLQAPYFSITLPERFELDAF
DLEIIEDTIGGNVMPHEEITLKDGMWKTRGVAKYSLNQDHCEEFAACGDTWSSGYSMNED
VLSSHLVDVMEQGTLCSVSTLQASMEKLQGSMFSHHECEDLEMFLEVEEEPTNTRKSFVE
DHLTDEEESKVPDKIGSDETHAGMSVLKLCDDSVCQEASLNLEMFGGVEEEPGKLAKLYH
QSEEQQKEVPGVEQSENETQSVLNDGNVSDVEVSIEKLLESRFFQEECMDANTFLAVEEP
PEHARPFNEEHQSNAGNTSLPETTTLGKRKQQLVSEDHPLYIKLDATPQSKFKDVSGANT
PEFMVISTPAAKEHARALRKRKCFFDDVVVFPNNVIKECIENTGDLVSKRRKLPHTAFAV
WKACRFSNLDKCFLEPLIPCASLELGSLFRTKKLQIPETVKSVGGSVEIEEPSKKLDASE
SQNIGGSVENTEHLEKLNVSGSPLVGRLDETVETAENMFIQESAGILESPQKFVSECPTS
ARLVETMELSDMSESYTVGRSVETVETLEKSNVSGSPSASRFAGTLERPGKLDIAESPTA
GGSLEQMAIAPETPIQCTTSVRSFESPERPDIYDADGLRSKTVEKEICRSLDQELDFNLL
NEDMNTSGDNQEHYGWSERTRVAVKCLHASFLIQKKRRQEEVLNLLRILEGRTKRESARL
FYEILVLKSKGYVDVKEENLYGDILIWKTPQWDQACRS
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgttttactcacactgccttctgtcaaggaaaggtccattaggttccatttgggttgct
gcttactacttcaaaaggcttaaaaaagcacaagtcacttccactgatatctcctcctcc
gttgataaaattttgcaagatgggtttgatgttgttacatatagagtactggcctacctt
cttcttggtgtagtcagaatatactccaaaaaagttgaatatctgtttgatgactgcaac
aaagttcttcttaacgtcaaggactttgtgctctgtaataaagatgggatacttgtggaa
accttgcaagcaccttacttctctattactctaccagaaagatttgaacttgatgctttt
gatctggagattattgaagatactattggaggcaatgtgatgccccacgaagaaattaca
cttaaagatggcatgtggaaaactaggggtgtagcgaaatattctctaaaccaggatcac
tgtgaggaatttgctgcctgtggagatacttggtcttcaggttacagtatgaatgaagat
gttttgtcatctcatttggtggatgttatggagcaaggcacattgtgtagtgtaagcact
ctacaagcaagcatggagaagcttcaaggcagtatgttctctcatcatgaatgtgaggac
cttgaaatgtttcttgaggttgaggaggagcctacaaacactagaaaatcatttgttgaa
gatcatctaactgatgaggaggaatcaaaggttccagataagataggttcggatgaaaca
catgcaggaatgagtgtgctgaagctttgtgatgacagtgtctgtcaggaagcatctctg
aaccttgaaatgtttggtggggtagaggaagaacctggaaagcttgctaagctatatcac
caatctgaggagcagcaaaaagaggttcctggtgtggaacaatcagaaaatgaaacgcaa
agtgttttaaatgatggtaatgtgtctgatgtagaagtatccatagagaagcttctagag
agtagattttttcaagaagaatgtatggatgctaatacatttcttgcggttgaggagcct
ccagaacatgctagaccatttaatgaagagcatcagagcaatgcagggaacacaagttta
ccagaaacaacaacattgggaaaaagaaagcagcaacttgtctcagaagatcacccattg
tatataaaacttgacgctactcctcaatccaagttcaaagatgtttcaggagctaacaca
ccagagtttatggttatttctacaccggctgctaaggagcatgctcgtgctctcaggaaa
agaaagtgtttctttgatgatgtggtagtgtttcctaataacgtaattaaggaatgcata
gaaaacacaggtgacttggtgtccaaacgtagaaagcttcctcatactgcttttgctgtc
tggaaagcctgtcgattttccaatcttgacaagtgtttcctggagcctctgattccttgt
gcttcactagagcttggatccctctttcgcacaaagaaattacaaattccagaaacagtc
aagagtgttggtggatcagttgaaatagaggaaccttccaaaaagttggatgcttcagag
tctcaaaacattggagggtcagtggaaaatacagagcatctggaaaagttaaatgtttca
ggatctcctcttgttggcagattagatgaaactgtggaaactgcagaaaatatgtttatt
caagaatcagctgggatcttggaatctccacaaaagtttgtgtctgaatgtcctactagt
gctagattggttgagaccatggaactttcggacatgtcagaatcttatactgttggaaga
tcagttgaaactgtggagactctagagaagtcaaatgtgtctggatctccttctgctagt
agatttgctggaactttggaacgtcctggaaagttagatatagcagaatctcccactgct
ggtggctctttagagcaaatggcaatcgctccagaaacacctattcagtgcacaacatcg
gtgaggtcttttgagagccctgagagacctgatatttatgatgcagatggactaaggtcc
aaaactgttgagaaagaaatttgccgtagcctggatcaagaacttgatttcaatctgctt
aatgaggacatgaatacatctggagataaccaggagcattatgggtggtcagaaagaacc
agagtggcagtgaaatgcttgcatgcaagttttctgatacagaagaaaagaagacaggag
gaagttctaaatttattgcgaattttggaaggaagaaccaagagagagagtgccaggctc
ttctatgagatactggtattgaaaagtaaaggatatgtggacgtgaaggaagaaaattta
tacggtgacattctcatctggaaaacccctcaatgggaccaagcttgtagatcgtaa
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