Populus trichocarpa (black cottonwood): 18107269
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Entry
18107269 CDS
T01077
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18107269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18107269
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18107269
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18107269
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
18107269
NCBI-ProteinID:
XP_006373270
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All DBs
Position
17:7348379..7354034
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AA seq
666 aa
AA seq
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MSALLNSSLNGSASNLPDTTGRSFATSFSGQSGAASPVFHHSGLHNIHGSFNVPNMPGTL
ASRNSTVNNIPSGGVQQPTGSLSGGRFASNNLPVGLSQLSHGSSHGHSGVTNRGGISVVG
NLGYGSNTNGIGGSIPGILPASAGIGNRNAVPGLGVSQILGNTGPRITSPGGTMVSGGNI
GRSLSTGGGLSVPGLASRLNLTANSGSSSLSLQGQNRLMGGVLSQGNPQVIPMLGNSYHT
AVGPLSQSHVPGVNNLSSMGMGMLNDVNSNDISPFDINNDFPQLTSRPSSAGGPQGQLGS
LRKPGIGGSPIVQQSQEFSIQNEDFPALPGFKGGNADYTMDMHQKEQLHDNTISMMQSQH
FSIGRSAGFNLGDTYSSYRPQQQQQQQQQQQHSPAVSSSISFASINNQDLHDSEIFPSSH
SAYHPQTSGPPGLGLRPLNLPNTVSSVGSYDQLIQQYQHPSHSQFRLQQMSAVNQPFRDQ
GIKSMQAAQSAPDPFGLLGLLSVIRMNDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSP
WSEEPAKGDLEFNVPKCYYAKPPPPLDHLYFSKFSTETLLYAFYSMPKDEAQLHAANILY
ERGWLYHKEQRRWLKRVPNTEPLVKTSAYERGSYHCFEPNTFEIKLQENFVLYYEMVEKR
PSLPHH
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgttacttaattcttctctaaacggatcagcttcaaatcttccagataccacg
ggacgatcttttgctacatccttctctggtcagtctggtgcagcatctcctgtttttcat
cacagtgggctgcataatattcatgggagctttaatgtacccaacatgccaggaacactt
gcatcaagaaactccacagtgaacaacattccttcgggcggggttcaacaaccaactgga
agtctctccggtggaaggtttgcatccaataatcttcctgttggtctctctcagttgtca
catggtagttcccatggacattcaggggttacaaatagaggaggtataagcgttgtagga
aatctgggatatggtagtaacacaaatggaattggtggttctatacctggaattctccca
gcctctgctggaataggtaaccggaatgctgttccaggtttgggggtatcccaaattttg
ggtaatacaggtccaaggattacgagtcctggagggaccatggtatctggtgggaacatt
gggagaagcttaagcacaggtggaggactatctgtccctggtcttgcatctcgtctgaat
ttaactgcaaatagtggatctagcagtttaagtttgcaaggacaaaatagattaatgggt
ggtgtgctttcacaaggaaatccacaggtaattcctatgttaggaaactcataccatact
gctgttggtcctctttcccaaagccatgtaccgggtgtgaacaatctcagctctatggga
atgggaatgttgaatgatgtgaactccaatgacatttcccctttcgacattaacaatgat
ttccctcagttgacaagtcgtcctagttctgctggagggcctcaaggtcaattgggttca
ctacgaaaacctggtataggaggtagtcccattgttcaacaaagccaagagttcagcatt
cagaatgaagattttccagctttacctggatttaaaggtggtaatgctgattatacaatg
gatatgcatcagaaagaacaactgcatgataatactatctcaatgatgcaatctcagcac
ttctctattggaagatctgctgggttcaacttaggagacacttactcatcatatcgtcct
cagcagcagcagcagcagcaacagcaacagcaacactcccctgctgtcagtagtagcatc
tcttttgcatctataaacaatcaagatctacatgattcagaaatatttccttcttcgcat
tcggcctatcacccacagacaagtggaccacctggacttggtctgagacctttaaatttg
ccaaatacagtatctagtgttggatcatacgaccagctcatccagcagtatcaacaccca
agccattcccagtttcgactacaacaaatgtcggctgtcaatcaaccatttagagatcag
ggcataaaatccatgcaggcagcacaatctgcgcctgatccatttgggttacttggcttg
ttaagtgttataaggatgaatgatcctgatctgacctccctggcacttgggattgatttg
accacgcttggattgaatttgaattcaacagaaaatcttcacaagacttttggctcccca
tggtctgaagagcccgctaagggtgatcttgagttcaatgttccaaaatgctattatgct
aagccaccacctccactggatcatctttacttttcaaaattctcgacagaaacattgctt
tatgcattttacagcatgccaaaagatgaagctcaactacatgctgccaacatactttat
gaaagaggctggttgtaccacaaggagcaacggcgttggttaaaaagagtaccgaacaca
gagccacttgttaaaacgagcgcatatgagagagggtcttaccattgttttgaaccaaat
acatttgagataaagctccaggaaaatttcgttctctattatgagatggtggaaaagaga
ccgagcctaccacatcattaa
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